LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mibi06g1691	ATGCCAGAGCTGAGAAGTGGAGCTAGGAGATCAAAGCGGCTTGGTGATCTTCAGCCTGCCACACAACCTATTGAAGCGAACTGCGTTCAAATTGCTCCAACCAAGGCCAGAAGGAGAGTTGGAAGAGGGAGAGGAGGGAATGCCACAGCTGTAGCAAAAGGAACTTCACCAGCAGTACCCACAAGACGAACTGCGGCTGGTAGAGGCCGGGGAGGTAGATTGGTTGATCTTGTTCCTGAACCTGTTGCGCTTGGGACCCCTGAACCTGTTCTTAATCGTGAAGAGGTAGCAGCCAATAATAATATTTTGATGGCGGGTGGAAGTGCAGACAAGGTGGCAGGAGCTGAAGAGGAGGCATGCACGACCCCTGTTCCTGAAACGGTTCAGGTTGGCAGTTCTCCTTTATATAAGATAGAGACAAAGTTGGGTAAGGGTGGTTTTGGCCAAGTCTATGTTGGCAGAAGGGTAAGTGGTGGCTCTGATCGGACAGGTCCTGATGCAATTGAGGTTGCTCTCAAGTTTGAACACAGAAATAGTAAAGGTTGCAATTATGGGCCTCCTTATGAGTGGCAAGTCTACAATACTCTGAATGGTTGTTATGGCATTCCCTGGGTTCATTACAAGGGTCGCCAAGGAGATTTCTATATACTGGTCATGGACATGCTTGGGCCCAGTCTCTGGGATGTATGGAATTCTCTTGGCCAGTCGATGTCACCAAATATGGCTGCATGCATTGCCGTGGAGGCAATATCAATTCTTGAGAAGCTCCATATGAAAGGGTTTGTGCATGGAGATGTCAAACCAGAGAACTTTTTACTTGGTCAACCTGGAACAGCTGATGAGAAGAAGTTGTATCTTATTGATCTTGGTTTGGCATCTAAATGGAAGGACACATCTGGTCAACATGTTGATTATGATCAGAGGCCGGACGTGTTTAGGGGAACCATAAGATATGCCAGTGTACATGCACATTTAGGTAGGACTGGAAGTAGGAGGGACGATCTTGAGTCCCTGGCATATACATTAATATTTCTTATTAAAGGGAGATTACCTTGGCAGGGTTATCAGGGTGACAATAAAAGTTTTCTTGTTTGTAAGAAAAAGATGGGTACTTCTCCAGAGTTGATGTGCTGTTTTTGTCCTGCTCCATTCAAGCAGTTCCTTGAAGCTGTTACTAACATGAAATTTGATGAGGAGCCTAACTATTCCAAGCTTATATCATTATTTGATAGCTTGATTGAGCCATCTTCTCAATTGAGACCAATCCGAATTGATGGAGCTTTAAAGGTTGGACAAAAGAGGGCTAGAATGCTTATAAATCTTGAAGATGATGAGCAACCAAAGAAGAAAGTGCGATTGGGGAATCCTGCTACTCAGTGGATATCTGTGTATAATGCACGGCGTCCTATGAAGCAGAGATATCACTATAATGTATCAGACAGTAGGCTTCGACAGCATGTAGACAAGGGTAATGAGGATGGCTTATATATCAGCTGTGTTGCCTCTTCATCAAATCTTTGGGCCCTAACCATGGATGCAGGAACAGGTTTCTCCTCTCAGGTCTATGAGCTGTCAGCAGTCTTCCTGCACAAGGATTGGATTATGGAACAATGGGAGAAAAATTACTATATTAGTTCTATAGCTGGTGCAACAAATGGGAGTTCCTTGGTTGTAATGTCCAAAGGAACTACGTACACCCAGCAGTCCTACAAAGTAAGCGAATCATTTCCTTTCAAATGGATCAATAAGAAGTGGAAAGAAGGATTTCATGTTACCTCCATGACCACTGCTGGCAGTCGTTGGGGTGTTGTTATGTCTAGGAATGCAGGGTATTCTGAACAGGTTGTGGAGCTTGACTTCTTATACCCAAGTGAAGGTATTCATCGGCGATGGGAGAGTGGTTATCGGATAACATCTATGGCTGCTACTGCTGATCAGGCTGCCTTCATTCTTAGCATACCAAAACGCAAATTGCTCGACGAGACTCAAGAGACTCTACGTACCTCTGCCTTCCCTAGCACCCATGTGAAGGAAAAATGGACCAAGAATCTCTATATAGCCTCAATATGTTATGGGCGGACTGTTTGTTAA	2091	0.4467	MPELRSGARRSKRLGDLQPATQPIEANCVQIAPTKARRRVGRGRGGNATAVAKGTSPAVPTRRTAAGRGRGGRLVDLVPEPVALGTPEPVLNREEVAANNNILMAGGSADKVAGAEEEACTTPVPETVQVGSSPLYKIETKLGKGGFGQVYVGRRVSGGSDRTGPDAIEVALKFEHRNSKGCNYGPPYEWQVYNTLNGCYGIPWVHYKGRQGDFYILVMDMLGPSLWDVWNSLGQSMSPNMAACIAVEAISILEKLHMKGFVHGDVKPENFLLGQPGTADEKKLYLIDLGLASKWKDTSGQHVDYDQRPDVFRGTIRYASVHAHLGRTGSRRDDLESLAYTLIFLIKGRLPWQGYQGDNKSFLVCKKKMGTSPELMCCFCPAPFKQFLEAVTNMKFDEEPNYSKLISLFDSLIEPSSQLRPIRIDGALKVGQKRARMLINLEDDEQPKKKVRLGNPATQWISVYNARRPMKQRYHYNVSDSRLRQHVDKGNEDGLYISCVASSSNLWALTMDAGTGFSSQVYELSAVFLHKDWIMEQWEKNYYISSIAGATNGSSLVVMSKGTTYTQQSYKVSESFPFKWINKKWKEGFHVTSMTTAGSRWGVVMSRNAGYSEQVVELDFLYPSEGIHRRWESGYRITSMAATADQAAFILSIPKRKLLDETQETLRTSAFPSTHVKEKWTKNLYIASICYGRTVC	696

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mibi06g1691	696	Pfam	Protein kinase domain	136	370	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Mibi06g1691	696	SUPERFAMILY	Protein kinase-like (PK-like)	136	422	IPR011009	-
	Mibi06g1691	696	ProSitePatterns	Protein kinases ATP-binding region signature.	142	173	IPR017441	GO:0005524
	Mibi06g1691	696	FunFam	Casein kinase 1-like protein	108	455	-	-
	Mibi06g1691	696	CDD	STKc_CK1	136	409	-	-
	Mibi06g1691	696	MobiDBLite	consensus disorder prediction	36	73	-	-
	Mibi06g1691	696	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	261	273	IPR008271	GO:0004672\|GO:0006468
	Mibi06g1691	696	Gene3D	Transferase(Phosphotransferase) domain 1	104	458	-	-
	Mibi06g1691	696	PANTHER	CASEIN KINASE-RELATED	137	660	-	-
	Mibi06g1691	696	MobiDBLite	consensus disorder prediction	1	21	-	-
	Mibi06g1691	696	ProSiteProfiles	Protein kinase domain profile.	136	413	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Mibi06g1691	696	SMART	serkin_6	136	438	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mibi06g1691	Mibi-ChrMibi06	37392264	37397465	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mibi06g1691	237	409	MAP Kinase Kinase Kinase	AT5G50180	24.309	9.19e-08	52.8

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CK1_CK1-Pl	Mibi06g1691		Pkinase	2.5e-16	CL0016