Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi06g1669 ATGACTAAATCGTTCACGAACTATGTGGATCTGAAGAAAGCTGCAATGAAAGACGAAGTGGATCTGGAATCTGGTCTTCGTCAATCCGGCGTGGAACTCAGATCTTCAATTAATCAATTGGACACCGACATGGGTCTCTTCCTGGAAGAGGCCGAGAAGGTGAAAACGGAGATGGGTGATCTTCGTGACATTCTGGGAAAACTTCAGCAAGCAAATGAAGAAAGCAAATCCCTGCACAAGCCTGAAGCTTTAAAATCCTTAAGGAACAGAATCAACGCAGAGATCGTCTCCGTGCTCAAGAAGGCTAGAACAATCCGATCTCAATTGGAAGAAATGGACAGAGCTAATGCGGCCAATAGAAGACTCTCTGGCCTCAAAGATGGCACGCCTGCTATTTACAGAACCAGAATTGCTGTGACCAATGGCCTTCGCAAGAAACTGAAGGAGCTAATGATGGAGTTTCAGGAGCTGAGGCAGAAGATGATGACTGAGTACAAAGAAACAGTGGGAAGACGCTATTTTACTGTAACAGGTGAACACCCAGAAGAAGAAGTGATTGAGAAGATAATCTCAAATGGGGAAGAGGAGTTTTTAAGCAAAGCGATTCAAGAGCATGGGAGAGGGAAAGTTCTAGAGACGGTGGTGGAGATACAGGACAGGCATGATACTGCTAAAGAGATTGAAAAGAGTCTTTTGGAGCTTCACCAGGTGTTTCTAGACATGGCAGTGATGGTTGAAGCTCAGGGAGAGAAGATGGATGACATTGAGCATCACGTGCTTCATGCTTCTCACTATGTCAAAGATGGGACTAAAAATCTGCAGACTGCAAAGAAATACCAGAGCAGCAGTAGAAAGTGGATGTGCATTGGGATTATTCTTCTCTTGATCCTGATCCTAGTTATCGTTATCCCTATTGCTACCAGTTTCAGCAGCTCTTGA 939 0.4452 MTKSFTNYVDLKKAAMKDEVDLESGLRQSGVELRSSINQLDTDMGLFLEEAEKVKTEMGDLRDILGKLQQANEESKSLHKPEALKSLRNRINAEIVSVLKKARTIRSQLEEMDRANAANRRLSGLKDGTPAIYRTRIAVTNGLRKKLKELMMEFQELRQKMMTEYKETVGRRYFTVTGEHPEEEVIEKIISNGEEEFLSKAIQEHGRGKVLETVVEIQDRHDTAKEIEKSLLELHQVFLDMAVMVEAQGEKMDDIEHHVLHASHYVKDGTKNLQTAKKYQSSSRKWMCIGIILLLILILVIVIPIATSFSSS 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi06g1669 312 ProSitePatterns Syntaxin / epimorphin family signature. 220 260 IPR006012 GO:0005484|GO:0006886|GO:0016020
Mibi06g1669 312 SUPERFAMILY t-snare proteins 42 269 IPR010989 GO:0016020|GO:0016192
Mibi06g1669 312 Pfam SNARE domain 251 302 IPR000727 -
Mibi06g1669 312 PANTHER SYNTAXIN 55 298 IPR045242 -
Mibi06g1669 312 SMART SynN_4 39 166 IPR006011 GO:0016020
Mibi06g1669 312 CDD SynN 44 201 IPR006011 GO:0016020
Mibi06g1669 312 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 214 276 IPR000727 -
Mibi06g1669 312 Coils Coil 140 167 - -
Mibi06g1669 312 Pfam Syntaxin 47 249 IPR006011 GO:0016020
Mibi06g1669 312 SMART tSNARE_6 209 276 IPR000727 -
Mibi06g1669 312 Gene3D - 210 310 - -
Mibi06g1669 312 CDD SNARE_syntaxin1-like 213 275 - -
Mibi06g1669 312 FunFam Syntaxin 132 207 307 - -
Mibi06g1669 312 FunFam Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group 41 172 - -
Mibi06g1669 312 Gene3D - 44 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi06g1669 Mibi-ChrMibi06 37169947 37170885 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi06g1669 1 312 SNARE and Associated Proteins AT1G08560 66.984 1.42e-133 380