Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi06g1559 ATGGGTGATGATTCCAGTAATAATCGTGAAGAAACAGTCATGATTCACAGCCTTGATGGTGAAGAAACTGGAGAAGAAAGAGACCCAGAAAGCAATCCACTCAACGAGCCATTACTCAAGAGAAATCGAACACTTTCCACCAATCCACTTGCTCTAGTTGGAGCCAAAGTTTCCTACATAGAAAGCTTGGATTATGAGATCAATGAGAATGATCTGTTCAAGCATGATTGGAGGAGCAGATCGAAAGTTCAAGTATTACAGTACATATTCTGTAAATGGTCACTGGCTTTTCTTGTTGGACTTCTTACAGGACTTATAGCCACCCTCATCAATCTAGCAATTGAGAACATTGCCGGTTATAAGATTCTAGCTGTCGTCGGATTCATCGAAGAGGACAGGTATTTAGCGGGGTTCTTATATTTCACCGGCTTAAATTTCTTATTGACATTCGTTGCTGCTATTCTCTGTGTGTGTTTTGCACCCACGGCAGCTGGACCTGGTATACCTGAAATCAAAGCTTATCTTAATGGCGTCGATACTCCTGACATGTATGGTGCCACCACATTGATCGTTAAGATCGTTGGAAGCATTGGTGCTGTGGCTGCAGGGCTAGATTTGGGAAAAGAAGGGCCATTGGTACATATAGGGGCCTGCATAGCTTCCTTACTAGGCCAAGGAGGCACTGAGAAACACCGGATCAAATGGCGATGGCTTCGATATTTCAACAACGATCGAGACCGCCGAGATCTTATCACCTGTGGATCTTCCTCAGGGGTTTGTGCAGCATTTAGGGCACCTGTTGGAGGAGTTCTGTTTTCTCTAGAAGAGGTTGCAACCTGGTGGAGAAGTGCTCTCCTCTGGAGAACCTTTTTCAGCACAGCTGTTGTGGCAGTAGTGCTCAGGGCCTTCATTGAAATCTGCAATTCTGGGAAATGTGGCCTCTTTGGCACAGGAGGATTGGTCATGTTTGATGTCAGCAATGTCACAGTGAGATACCATGTAATGGATATTATCCCTATTGTCATCATTGGCATCCTAGGTGGTTTATTTGGAAGCCTCTACAACTATCTTCTTCACAAGGTCCTTAGAGTCTACAGTCTCATCAATCAGAAGGGGAAAATGCACAAGCTCCTACTGAGTCTCTCAGTTGCACTCTTCACATCAGTGTGCCAATATTGTATTCCATTCCTAGCAACATGCATCCCCTGTGATTCGTCGCTTCCAGAAGATGCCTGCCCCACAAATGGACGGTCTGGAAATTTTAAACAGTTCAATTGCCCCAGTGGTCACTACAATGAGCTTGCTACTTTGCTGCTTACCACTAATGATGATGCCGTTAGAAACATTTTCTCAACCAACACTCCACATGAGTATCATGTATCTTCCCTCATAATTTTCTTCACACTCTATTGCATACTAGGACTCATTACTTTTGGGATTGCTGTGCCATCTGGGCTCTTCCTCCCAATAATCCTCATGGGTTCTGGTTATGGCCGTCTTCTTGGCGTCTGGATGGGACCCCACACAAACATTGATCAGGGCTTGTTTGCTGTTCTGGGTGCAGCCTCACTCATGGCCGGTTCAATGAGAATGACAGTATCAGTTTGTGTGATCTTCCTTGAACTCACAAACAATCTTCTGCTACTACCCATCACAATGATTGTCCTCCTGATAGCCAAGACTGTTGGAGACAGTTTTAACCCCAGCATCTATGAAATCATACTGCACTTAAAAGGGCTTCCTTTCTTGGACGCAAATCCTGAGCCATGGATGAGAAACCTCACAGTGGCTGAGCTTGTTGATGTAAAACCACCAGTAGTTACTCTCAATGGAGTAGAGAAGGTGTCTCGTATAGTGGAAGTTCTTAAGAACACAACACACAATGGTTTTGCTGTTGTGGATGAAGCAGGGGAAACTTCAACAGGAGTGGCCAGACTTCATGGACTGATCCTAAGAGCACACCTAGTGAAAGCCCTAAAGAAGAAATGGTTCCTGAAGGAAAAAAGGAGGACAGAGGAATGGGAAGTGAGGGAGAAATTTACTTGGGTGGATCTGGCCGACAGAGAAGTGAATATTGAGGAGGTGGCCATAACAAGGGAGGAAATGGAATTGTTTGTTGACCTCCATCCTTTCACCAATACAACTCCTTTTACAGTTCTAGAGAGCATGTCAGTAGCAAAAGCGATGGTCCTCTTCAGACAATTAGCACTCAGACATATGCTTGTTTTGCCAGATTATCATGCACCTGGGGTATCTCCTGTGATTGGGATCTTGACCAGACAGGATCTACTGGCCCACAATATTCTTACGGTCTTTCCTCACCTGAAGAAAATGTAA 2337 0.4467 MGDDSSNNREETVMIHSLDGEETGEERDPESNPLNEPLLKRNRTLSTNPLALVGAKVSYIESLDYEINENDLFKHDWRSRSKVQVLQYIFCKWSLAFLVGLLTGLIATLINLAIENIAGYKILAVVGFIEEDRYLAGFLYFTGLNFLLTFVAAILCVCFAPTAAGPGIPEIKAYLNGVDTPDMYGATTLIVKIVGSIGAVAAGLDLGKEGPLVHIGACIASLLGQGGTEKHRIKWRWLRYFNNDRDRRDLITCGSSSGVCAAFRAPVGGVLFSLEEVATWWRSALLWRTFFSTAVVAVVLRAFIEICNSGKCGLFGTGGLVMFDVSNVTVRYHVMDIIPIVIIGILGGLFGSLYNYLLHKVLRVYSLINQKGKMHKLLLSLSVALFTSVCQYCIPFLATCIPCDSSLPEDACPTNGRSGNFKQFNCPSGHYNELATLLLTTNDDAVRNIFSTNTPHEYHVSSLIIFFTLYCILGLITFGIAVPSGLFLPIILMGSGYGRLLGVWMGPHTNIDQGLFAVLGAASLMAGSMRMTVSVCVIFLELTNNLLLLPITMIVLLIAKTVGDSFNPSIYEIILHLKGLPFLDANPEPWMRNLTVAELVDVKPPVVTLNGVEKVSRIVEVLKNTTHNGFAVVDEAGETSTGVARLHGLILRAHLVKALKKKWFLKEKRRTEEWEVREKFTWVDLADREVNIEEVAITREEMELFVDLHPFTNTTPFTVLESMSVAKAMVLFRQLALRHMLVLPDYHAPGVSPVIGILTRQDLLAHNILTVFPHLKKM 778
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi06g1559 778 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 36 769 - -
Mibi06g1559 778 CDD ClC_6_like 61 583 - -
Mibi06g1559 778 PRINTS Chloride channel signature 192 211 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Mibi06g1559 778 PRINTS Chloride channel signature 256 275 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Mibi06g1559 778 PRINTS Chloride channel signature 514 530 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Mibi06g1559 778 PRINTS Chloride channel signature 532 551 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Mibi06g1559 778 PRINTS Chloride channel signature 482 502 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Mibi06g1559 778 PRINTS Chloride channel signature 570 584 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Mibi06g1559 778 PRINTS Chloride channel signature 161 178 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Mibi06g1559 778 SMART cbs_1 605 660 IPR000644 -
Mibi06g1559 778 SMART cbs_1 715 768 IPR000644 -
Mibi06g1559 778 CDD CBS_pair_voltage-gated_CLC_euk_bac 603 766 - -
Mibi06g1559 778 Gene3D Clc chloride channel 84 585 - -
Mibi06g1559 778 FunFam Chloride channel ClC3 84 401 - -
Mibi06g1559 778 PRINTS Plant CLC chloride channel signature 291 301 IPR002251 GO:0005247|GO:0006821|GO:0016020
Mibi06g1559 778 PRINTS Plant CLC chloride channel signature 277 285 IPR002251 GO:0005247|GO:0006821|GO:0016020
Mibi06g1559 778 PRINTS Plant CLC chloride channel signature 434 450 IPR002251 GO:0005247|GO:0006821|GO:0016020
Mibi06g1559 778 PRINTS Plant CLC chloride channel signature 66 74 IPR002251 GO:0005247|GO:0006821|GO:0016020
Mibi06g1559 778 PRINTS Plant CLC chloride channel signature 309 316 IPR002251 GO:0005247|GO:0006821|GO:0016020
Mibi06g1559 778 ProSiteProfiles CBS domain profile. 602 667 IPR000644 -
Mibi06g1559 778 SUPERFAMILY CBS-domain pair 587 765 IPR046342 -
Mibi06g1559 778 Gene3D - 586 770 IPR046342 -
Mibi06g1559 778 MobiDBLite consensus disorder prediction 1 34 - -
Mibi06g1559 778 Pfam CBS domain 714 764 IPR000644 -
Mibi06g1559 778 Pfam CBS domain 603 660 IPR000644 -
Mibi06g1559 778 ProSiteProfiles CBS domain profile. 712 777 IPR000644 -
Mibi06g1559 778 SUPERFAMILY Clc chloride channel 70 585 IPR014743 -
Mibi06g1559 778 MobiDBLite consensus disorder prediction 1 38 - -
Mibi06g1559 778 Pfam Voltage gated chloride channel 149 563 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi06g1559 Mibi-ChrMibi06 36023793 36027501 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi06g1559 24 777 Ion Channels AT3G27170 78.100 0.0 1212