Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi06g1546 ATGGGTCGCATCATGACGGCGGTGCTGGTGGTGGCGGTCATGGTGGTAGCGGCACAATTACTTGGAGGTGACAGAAAACTTGCTAGACATCAGTTCATGGAGGCGACAGAAAATAATGATTATACTGGAACCTTTGAAACAGTTCATTGGCCAGGAAAGTTGCTTTCAGTTTCCAAGGGTTGGACTCATGGTAATAATGAAGGGAAAACATTGAGAATAGGTGTGCCTGCAAAAGGTGCCTTTACCCATTTTGTGAATGTGACTTATGATCAGAGTAAGAATGAAACTTTTATCACAGGTTTCTCAATTGATGTCTTCAAAGCTGCAGTTGAACGTTTGCCTTATCACTTGCAATATGAATTTATACCGGTAAACTGCTCTTATGATGAAATGGTTCAAAAAGTCTACAATAAGGAACTCGATGCTGCTGTTGGAGATACAGAAATAGTGGCATATAGATATCGTTATGTGATATTTTCTCAACCATATGTTGAATCTGGCCTTGACATGGTGGTAACTGTAAAGCCCAATAAGTCAAAAGAAACATGGATGTTCATAAGTGCCTTCACAAAAGAGACTTGGCTGGTAATGGCACTAATGCACATCTTCATCGGATTTATCATCTGGATGATGGAACGGCAAGTGAATGAACAATTGAAAGGACTTGGGGCTATGCTTTGGTTTTTGGTCAATGTTATCTTCTATGCACACAGAGAACCGATCAAAAACCCTTTTGCTCGAATTGTGTTGGCACCGTGGTTATTCATAATCCTCATTCTCACGACTAGTTTTACAGCTAGTTTGACATCCATGATGACTATCAGTCAGCTTGAACCATCTGTGTTAAACATCCAAACCCTTAAACGGACAAATGCCCCTGTAGGGTGCAATAGAAATTCATTTATCATGAGATATTTGACAGATGTATTAAAATTCAAGCATAAGAATATTCGAAAAATTGATTCCATTAGTGATTACCCTACAGCCTTTAAGAACAGGGACATTGAAGCAGCTTTCTTTGTTGCACCACATGCTAAAGTCTTCCTTGCCAAGTACTCATGCGCAGGCTTCGTCAAAGCAGGGGACGCATTCAAGCTTGGGGGCTTTGGATTCGCATTCACGAAAGATTCATCCAAACTTGCTATTGACATATCAGAGGCAGTTCTGAATGTGATAGAGGATGGAGAAACACAACAATTAGAAGACGATATGATATCCACAGTCAGTTGTTCCTCTTCAGATGACAAGACCAAAGAAGATGGATCATTGGGAATTCAGCCTTTCCTTGGCCTGTTTTACATTTCTGCAACTGTTGCTGTTCTTGCTCTCCTTGCATGGTCATATTCCATCAAGGATTTGCTGATAGGTGAATTGCAAACCTTGACGAATCACATACAAGAATCATATTCACATTTTTGGATGATACTACTGTGGAACAGGACAAAAGCATTTCTGACTCAAATATACTCAAGATTTCAAATAATGATAAATAGAAGACATTTACCTTCCATTGAGCCTGATAATGCTCGAATCGAGCTACCTCCAATTGAACCCAACAATGCTCAAATATGA 1572 0.3989 MGRIMTAVLVVAVMVVAAQLLGGDRKLARHQFMEATENNDYTGTFETVHWPGKLLSVSKGWTHGNNEGKTLRIGVPAKGAFTHFVNVTYDQSKNETFITGFSIDVFKAAVERLPYHLQYEFIPVNCSYDEMVQKVYNKELDAAVGDTEIVAYRYRYVIFSQPYVESGLDMVVTVKPNKSKETWMFISAFTKETWLVMALMHIFIGFIIWMMERQVNEQLKGLGAMLWFLVNVIFYAHREPIKNPFARIVLAPWLFIILILTTSFTASLTSMMTISQLEPSVLNIQTLKRTNAPVGCNRNSFIMRYLTDVLKFKHKNIRKIDSISDYPTAFKNRDIEAAFFVAPHAKVFLAKYSCAGFVKAGDAFKLGGFGFAFTKDSSKLAIDISEAVLNVIEDGETQQLEDDMISTVSCSSSDDKTKEDGSLGIQPFLGLFYISATVAVLALLAWSYSIKDLLIGELQTLTNHIQESYSHFWMILLWNRTKAFLTQIYSRFQIMINRRHLPSIEPDNARIELPPIEPNNAQI 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi06g1546 523 FunFam Glutamate receptor 66 181 - -
Mibi06g1546 523 Gene3D - 283 367 - -
Mibi06g1546 523 Gene3D - 63 189 - -
Mibi06g1546 523 Gene3D - 368 401 - -
Mibi06g1546 523 SMART GluR_14 70 407 IPR001320 GO:0015276|GO:0016020
Mibi06g1546 523 CDD GluR_Plant 69 405 - -
Mibi06g1546 523 FunFam Glutamate receptor 182 315 - -
Mibi06g1546 523 Pfam Bacterial extracellular solute-binding proteins, family 3 98 402 IPR001638 -
Mibi06g1546 523 Pfam Ligand-gated ion channel 403 436 IPR001320 GO:0015276|GO:0016020
Mibi06g1546 523 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 38 445 - -
Mibi06g1546 523 SUPERFAMILY Periplasmic binding protein-like II 50 402 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi06g1546 Mibi-ChrMibi06 35922972 35925363 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi06g1546 50 444 Ion Channels AT5G11210 36.627 1.40e-78 261