Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi06g1524 ATGGCTTATCTCCCAGCTTGCTTTCTTCTTCTCTCTTTCTCTCTCATTGCTTCCTCCGTCATCGCAGTTCAACACCCTGAGCTAGTCGTACAAGACGTGCACAGAAGAATCAATGCTTCTAGAAGGAACTTGGGTTACTTATCATGTGGAACCGGCAACCCCATTGACGACTGCTGGCGGTGCGACCCTAACTGGGAGACAAACCGCCAACGGCTAGCCGACTGCGCCATCGGCTTCGGCAAGGACGCCATCGGAGGCAAACATGGTCAACTCTACGTCGTGACCGACTCGGGCGACGACGACCCGGTAAACCCTAAACCCGGAACCCTAAGGTACGCAGTCATACAAGACGAACCACTATGGATCATCTTCAAGAGAGACATGGTCATAACTCTAAAGCAAGAGCTAGTCATGAACTTCTTCAAGACCATCGACGGCAGAGGAGCCAGCGTTCATATCGCCGGCGGCGGATGTATTACGATACATTACGCCAGCAACATTATCATCCATGGTGTTCATATTCATGACTGTAAGCCCACTGGAAATGGTGATATCAGAAATTCTCCTAGGCATTATGGGTGGTGGACGGTGTCGGATGGTGATGGAATATCTATATTTGATTCGAGGCATGTTTGGGTTGATCATTGCTCGCTTTCTAATTGTCGGGATGGTCTCATTGATGCTATCCATGGTTCTACTGCCATTACTATCTCTAACAACTACATGACACACCATGATAAGGTCATGTTGTTGGGACACAGTGATTCTTACACGCGGGATAAGAACATGCAGGTCACCATTGCTTTCAACCACTTTGGAGAAGGCCTCGTACAGAGGATGCCAAGGTGTAGGCATGGGTATTTCCATGTGGTGAATAATGATTATACGCATTGGGAGATGTATGCGATAGGAGGGAGTGCTAATCCGACGATAAACAGTGAGGGGAATAGGTTTCTGGCACCAAATAATAGGTATAGCAAGGAGGTGACGAAGCATGAGGATGCTGGGGAAGAAGAGTGGAGGAACTGGAACTGGAGATCGGAAGGTGACTTGTTCTTGAACGGAGCTTATTTCAGACAATCTGGTGCTGGTGCTTCTTCAACCTATGCTAGAGCTTCAAGTCTCAGTGCAAGACCTTCTTCTCTTGTTGGTTCCATGACTGTCACTGCTGGTGTACTCACGTGCAGGAAGGGCGTGCCTTGCTGA 1206 0.4859 MAYLPACFLLLSFSLIASSVIAVQHPELVVQDVHRRINASRRNLGYLSCGTGNPIDDCWRCDPNWETNRQRLADCAIGFGKDAIGGKHGQLYVVTDSGDDDPVNPKPGTLRYAVIQDEPLWIIFKRDMVITLKQELVMNFFKTIDGRGASVHIAGGGCITIHYASNIIIHGVHIHDCKPTGNGDIRNSPRHYGWWTVSDGDGISIFDSRHVWVDHCSLSNCRDGLIDAIHGSTAITISNNYMTHHDKVMLLGHSDSYTRDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSEGNRFLAPNNRYSKEVTKHEDAGEEEWRNWNWRSEGDLFLNGAYFRQSGAGASSTYARASSLSARPSSLVGSMTVTAGVLTCRKGVPC 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi06g1524 401 SMART amb_all 127 324 IPR002022 -
Mibi06g1524 401 PRINTS Pollen allergen Amb family signature 99 124 IPR018082 -
Mibi06g1524 401 PRINTS Pollen allergen Amb family signature 135 151 IPR018082 -
Mibi06g1524 401 PRINTS Pollen allergen Amb family signature 199 220 IPR018082 -
Mibi06g1524 401 PRINTS Pollen allergen Amb family signature 343 367 IPR018082 -
Mibi06g1524 401 PRINTS Pollen allergen Amb family signature 372 395 IPR018082 -
Mibi06g1524 401 PRINTS Pollen allergen Amb family signature 75 92 IPR018082 -
Mibi06g1524 401 PRINTS Pollen allergen Amb family signature 301 320 IPR018082 -
Mibi06g1524 401 PRINTS Pollen allergen Amb family signature 279 298 IPR018082 -
Mibi06g1524 401 Gene3D - 52 394 IPR012334 -
Mibi06g1524 401 SUPERFAMILY Pectin lyase-like 53 392 IPR011050 -
Mibi06g1524 401 PANTHER PECTATE LYASE 18-RELATED 26 398 IPR045032 GO:0030570
Mibi06g1524 401 FunFam Pectate lyase 52 394 - -
Mibi06g1524 401 Pfam Pectate lyase 135 318 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi06g1524 Mibi-ChrMibi06 35690180 35692289 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi06g1524 1 401 Polysaccharide Lyase AT5G63180 74.568 0.0 621