Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi06g1476 ATGATGTCGAGGAACATGTATGAGTGGTTTTTAAACCATACCCATTTGAAGATGGCTTGGATACCGCATCAAATCCAGGAAAAAGATGGGTATTTGAATTACCCATCACCGGTTGTGCCTTCATTTCCAACCCCATTCCCAGGTTCTGTCAGCAATGAATCAATGGCATCTTCGTCTCCATCACCTCCATCTGGTGGGAGTACTAGAATTAGTCCGGCTGTTCTTTTCATTATAGTGATTCTGGCCTTGCTGTTTTTTGTGTCTGGTTTGCTTCATTTGCTTGTTAGATTTTTGGCCAAGAACCCATCGGCTGGTCCATCTGCTCAATCTAATGGACAGAATGGCTCTGATGCTTTGCAGAGACAGCTGCAACAGCTTTTCCATCTACATGATTCTGGGCTGGATCAAGCTTTTATTGATGCGCTTCCTGTTTTCCAGTATAGAGAAATTGTGGGTCTGAAAGAACCATTTGACTGTGCTGTTTGTCTTTGTGAATTTTCTGAAAATGATAAGCTTAGGCTGCTTCCTACCTGCAGCCATGCTTTTCACATTGATTGCATAGACACCTGGCTCTTGTCCAATTCGACTTGTCCACTCTGCAGAGGAAATCTCTTCTCTCCAGGATTCCCTATTGAAAACCCGGTGTTTTATTTCGATGATATGAGGGAAGAGGATGGGTGCCCTTGCAGTGGAGAAAGTGGGGTTACTAACAGACAGAAATCTGTGGAAATTGAAGAAATTGAAGAGAAGGCTGTTCTCCCTGTAAGACTTGGTAAATTCAGAAGGCTTGATATGGATGCAGGGGATAATGCAGGAGGTGAAACTAGTAGTAGCAATTTGGATGCAAGAAGATGCTTCTCAATGGGGTCTTACCAGTATGTGCTTGGCAACTCAGAACTGCGAATTCCCTTGAACAGTGATAGAAAGATCTCTGAAGGAACAGAACAATCTGATAAGCTTTCAATGGAGGGTGATAAGGAAGCAAAAAAGATTACTAGTGTAGGTAAGGGTGAGAGCTATTCTGTTTCAAAAATCTGGCTGTGGTCCAACAAGGGAAAGTTCTCAAGTTCTTCGAATGATCGCATGGGCGTGCCATCTTCTCTCAACACAGATTTGCCTTGGATGAGAGCAATGGAAGGAACCTAA 1146 0.4328 MMSRNMYEWFLNHTHLKMAWIPHQIQEKDGYLNYPSPVVPSFPTPFPGSVSNESMASSSPSPPSGGSTRISPAVLFIIVILALLFFVSGLLHLLVRFLAKNPSAGPSAQSNGQNGSDALQRQLQQLFHLHDSGLDQAFIDALPVFQYREIVGLKEPFDCAVCLCEFSENDKLRLLPTCSHAFHIDCIDTWLLSNSTCPLCRGNLFSPGFPIENPVFYFDDMREEDGCPCSGESGVTNRQKSVEIEEIEEKAVLPVRLGKFRRLDMDAGDNAGGETSSSNLDARRCFSMGSYQYVLGNSELRIPLNSDRKISEGTEQSDKLSMEGDKEAKKITSVGKGESYSVSKIWLWSNKGKFSSSSNDRMGVPSSLNTDLPWMRAMEGT 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi06g1476 381 ProSiteProfiles Zinc finger RING-type profile. 159 201 IPR001841 -
Mibi06g1476 381 SMART ring_2 159 200 IPR001841 -
Mibi06g1476 381 MobiDBLite consensus disorder prediction 308 328 - -
Mibi06g1476 381 FunFam RING-H2 finger protein ATL46 121 206 - -
Mibi06g1476 381 Pfam Ring finger domain 158 201 IPR001841 -
Mibi06g1476 381 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 67 346 - -
Mibi06g1476 381 CDD RING-H2_PA-TM-RING 158 201 - -
Mibi06g1476 381 SUPERFAMILY RING/U-box 138 207 - -
Mibi06g1476 381 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 134 206 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi06g1476 Mibi-ChrMibi06 35129100 35130245 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi06g1476 89 358 C3H Transcription Factor Family AT2G18650 42.997 1.05e-61 202