Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi06g1453 ATGGGCTTGGGGGCTGATATGAAGAGAAGCAGGGACGATGCCTATGCTTCTTCTCAATTAAAGCGGCCCATGAGTTCTTCACGTGGAGATTCATATGGCCAATCCCAAATCCCTGGAGGGGGAGTGGGGGGAGGAGGAGGAGGAGTGGGAGGTGGGGTTACTTCGCAAGCATTGACTACCAATGACGCTTTGTCATATTTGAAGGAAGTGAAAGACATGTTTCACGATCAAAGAGAAAAATATGACTTGTTCTTAGAGGTCATGAAAGATTTCAAGGCTCAACGGACTGACACTACTGGTGTCATTGCAAGAGTGAAGGAATTGTTCAAAGGTCACAATAACTTGATTTTTGGATTCAACACCTTCTTGCCAAAGGGGTATGAGATTACTCTCGATGAGGTTGAGGCTCCTCCAAAGAAAACTGTTGAATTTGAAGAAGCTATAAGCTTTGTGAACAAGATAAAGAAACGATTCCAAAATGATGAGCATGTTTACAAATCATTCTTGGACATTTTGAACATGTACCGCAAGGAGCACAAGGATATTGGCGAGGTCTATAGTGAGGTTGCAACCCTTTTTGAGGACCATTCAGACTTACTTGATGAGTTCACTAGATTCTTACCTGATACTTCTGCAACGCCTTCTACACAGCATGCTCCTTATGGTCGAAATTCATTTCTACGTTTTAATGAGCGAGGTTCTACAGCACCAATGATACGGCCAATGCAACACCGCTATCGACGGGAAAGGATTAATTCCCATGATCGTGATCCAAGTGTTGATCGTCCTGAACTGGATGATGACAAGGCACTAATGAAACCTCACAAGGAGCAGAGGAAGCGTGTGGATAAGGAAAGTAGGGATAGGAAAATTCGTGACCAGGATGACAGAGAACCTGATCATGATAATAACAGGGATTTGAAATCAAGATTTTCTGAAAAAAAGATATCTGTCAAGAAGGCTGAAAATTTTGGGTTGGCAGCTGATTTTTCTTCCTATGATGACAAAGATACCTTAAAGAGCATGTATAACCAAGCATTCAGTTTTTGTGAGAAAGTTAAGGAAAAGTTGGGCAGTTCAGATGACTACCAAGCATTCTTGAAGTGCCTTCATATTTTCAGCAATGGGATAATAAAAAGGAATGATTTGCAGAATTTGGTGACTGACTTACTTGGAAAGTACCCCGATCTGATGGAAGAATTCAATGAGTTCTTGGAGCGTTGTGAAAATATTGATGGGTTCCTTGCTGGTGTCATAAGTAAAAAGTCATTAGGTGCTGATGGTCAAATACCTAGAACATTAAAGTTGGAGGACAAAGACAAAGAGCAGAAGCGTGAGATGAATGGAGCTAAAGACAAGGAAAGACATCGGGAGAAATACTGGGGAAAATCCATTCAAGAACTTGATTTAAGTAACTGTCAACTTTGTACTCCAAGCTATCGTCATCTACCTGAAGATTATCCAATTCCTGTGGCCAGTCAGAGATCTGAGCTTGGTGCTCAAGTGTTGAATGATCACTGGGTGTCTGTGACTTCAGGAAGTGAGGATTACTCTTTCAAACATATGCGCAGGAATCAGTATGAAGAAAGCTTGTTTAGATGTGAGGATGACAGATTTGAGCTGGACATGTTATTAGAATCTGTAAGCTCAGCTTCCAAATGTGCGGAGGATCTGTATAATAGCATTAATGAAGATAAGATTAATATGGAGGCTCCAATCTGTGTTGAAGATCACTTTAGCGCTCTAAATTTAAGGTGCATTGAACGCCTGTATGGAGATCATGGACTTGATGTTTTGGACATATTACGAAGAAATCCAACCCATGCACTTCCTGTGATATTGACTCGTCTGAAGCAGAAACAAGAGGAGTGGAGTAGGTGTCGTTCTGATTTCAACAAGGTTTGGGCTGAAATTTATGCAAAAAACCACTACAAATCGCTTGATCACCGGAGCTTCTATTTCAAGCAACAAGATTCAAAGAACTTGAGCACTAAATCTTTGGTGGCTGAAATCAAAGAAAAGAAAGCAAAGCAGCAGAAAGAGTATGATATTCTTCAGGCCATCGCTGCTGGAAATAAACAGCCTCTAATTCCACATCTAGAGTTTGAATATTCGGATGTTGGGATTCATGAGGACATGTATAAACTTATTCGTTATTCATGTGAGGAGGTCTTCTCAAGTAAGGATATGTCAAACAAAATTATGAGACTTTGGACTACCTTTTTGGAGATGATACTTGGTGTTCCCTCTCACACTCAAGGGACAGAAAATGTGGAGGACAAGAAAACTGGGCAACGTGTTGCCCATTTTGTCGCAGCAAATACAGGAGGTGATGGGAACTCTCATGGAGATTCTATTCTAATGAATTCAAGGTTGCCAAAATCCGATAATGAAGGGGATGGTAGAGTAAATGAGGTAAAGAGTGGTCAACAGACTAGTTTAGCAGCCAATGACAGAGAAAACGGACCTGTTGATGGTGACCAAGCTTGTAGAGATGATCCTCTAACGGATAAAGGGAAGAACAATGCTGATTGTGGTGAAAAAATCTCTGGTTCATGTAAACAGATCTCCTCTGATGAGCAATCAACTATCAATAACACTTTAATTGCAGTTAGAGGAGAAACTAGCATGACCAAGACCAGCTTAGAAATTACTTCAGGGTCTGTGCTTAATCCAGCAAGACTGACCACTACATTGGGCAGTGATGATGGTGTTGCCATTTCTCAGGGTGGTAGTGGACCTATGATGGAGGGTCGGGATATTGTTCCTCCAGTTCCATTAGTGAATGGGGTGCTAATTGAAAGCACTAAAGTCAAAAGCCATGAAGAATCTGCTGAACCTTACAAAGCTGAGAAGGAGGAGGGTGAATTATCTCCCAACGCTGACTCGGAGGAGGATAATTTTGTTGGGTATGGAGAATCCAGTGGACAGGCACTGCTTAAGTCAAAGCATAATATTGAAAGAGAAAATTATAAGTCTAGAAATGCGGAGGCAGAATGCTGTCCAGAGGCTGGAGGTGATAATGGTGCAGATGCTGATGATGAGGACAGTGATAATGTTTCTGAAGCTGGCGAAGATGCCTCAGGTAGTGAGTCTGCTGGTGATGCATGCTCTCGAGAAGAGCATGAGGAGGATGAAGATATAGAACGTGATGATGTTGAGGGTAAGGCTGAGAGTGAAGGTGAAGCGGAGGGCATATGTGATGCACAATCTGCTGGAGGGGAGGGCTCATCATTGCCATTATCAGAAAGGTTCCTCTTGTCTGTAAAGCCTCTTACGAAGCGTGTTTCTGCAGTTTCATTTGCTGAGGAAAGAAATAATTCCAGGGTCTTCTATGGAAATGATGATTTTTTTGTTCTTTTTCGGCTTCATCAAATACTTTATGAAAGGATCTCAGTAGCGAAAAAATATTCAACGAGTGCTGAAACGAAATGGAAAACAACAAAGGAGGCTTCTTCTCCGGATCCTTATTCAAGGTTTATGAATGCACTTTACAACTTACTTGATGGCTCTGCTGAAAATGTAAAGTTTGAAGATGAATGCCGAGCAATAATTGGAAACCAGTCATATATATTATTCACATTGGACAAGTTGATATATAAGTTGGTCAGACAGCTTCAAACAGTTGTAACGGATGAGATAGACAATAAACTCCTCCAATTATATGAGTATGAAAAATCGCGAAAACCTGGGAAATTAATCGACTCGGTCTATTATGCAAATGCGCGTGTCATCCTTCATGATGAGAATATATATCGGTTTGAATGTTCATGTACTCCGTCTCGAGCATTCGTTCAGCTGATGGACAATATGAATGAAAAGCCTGAGGTGTTTGCTGTTTCAATTGATCCAAATTTTTCCTTTTATCTGTATAATGATTTTTTGTCCGTTTCTCCTGGTAAAAGGGAACCCCATGGCATTATACTGCAAAGGAACAAGCGCAGGTATGGAGATCTAGATGAGCCTACATCTACGCGCTTGGCCATGGAAGGTGTTAAACTAACAAATGGATTGGAATGTAAAATAGCTTGCAACACGTCCAAGATCTCCTATGTTCTGGACACGGAAGATTTTTTCTTCCGCCCCAAAAGGCAAAGACAAACATCGTCATCAGGGACCTCATCTTCTCGGCATCATCGGGCTAGACAAGAAAGATTTCTCAGATTTTTATCTGTTTCATAA 4182 0.4125 MGLGADMKRSRDDAYASSQLKRPMSSSRGDSYGQSQIPGGGVGGGGGGVGGGVTSQALTTNDALSYLKEVKDMFHDQREKYDLFLEVMKDFKAQRTDTTGVIARVKELFKGHNNLIFGFNTFLPKGYEITLDEVEAPPKKTVEFEEAISFVNKIKKRFQNDEHVYKSFLDILNMYRKEHKDIGEVYSEVATLFEDHSDLLDEFTRFLPDTSATPSTQHAPYGRNSFLRFNERGSTAPMIRPMQHRYRRERINSHDRDPSVDRPELDDDKALMKPHKEQRKRVDKESRDRKIRDQDDREPDHDNNRDLKSRFSEKKISVKKAENFGLAADFSSYDDKDTLKSMYNQAFSFCEKVKEKLGSSDDYQAFLKCLHIFSNGIIKRNDLQNLVTDLLGKYPDLMEEFNEFLERCENIDGFLAGVISKKSLGADGQIPRTLKLEDKDKEQKREMNGAKDKERHREKYWGKSIQELDLSNCQLCTPSYRHLPEDYPIPVASQRSELGAQVLNDHWVSVTSGSEDYSFKHMRRNQYEESLFRCEDDRFELDMLLESVSSASKCAEDLYNSINEDKINMEAPICVEDHFSALNLRCIERLYGDHGLDVLDILRRNPTHALPVILTRLKQKQEEWSRCRSDFNKVWAEIYAKNHYKSLDHRSFYFKQQDSKNLSTKSLVAEIKEKKAKQQKEYDILQAIAAGNKQPLIPHLEFEYSDVGIHEDMYKLIRYSCEEVFSSKDMSNKIMRLWTTFLEMILGVPSHTQGTENVEDKKTGQRVAHFVAANTGGDGNSHGDSILMNSRLPKSDNEGDGRVNEVKSGQQTSLAANDRENGPVDGDQACRDDPLTDKGKNNADCGEKISGSCKQISSDEQSTINNTLIAVRGETSMTKTSLEITSGSVLNPARLTTTLGSDDGVAISQGGSGPMMEGRDIVPPVPLVNGVLIESTKVKSHEESAEPYKAEKEEGELSPNADSEEDNFVGYGESSGQALLKSKHNIERENYKSRNAEAECCPEAGGDNGADADDEDSDNVSEAGEDASGSESAGDACSREEHEEDEDIERDDVEGKAESEGEAEGICDAQSAGGEGSSLPLSERFLLSVKPLTKRVSAVSFAEERNNSRVFYGNDDFFVLFRLHQILYERISVAKKYSTSAETKWKTTKEASSPDPYSRFMNALYNLLDGSAENVKFEDECRAIIGNQSYILFTLDKLIYKLVRQLQTVVTDEIDNKLLQLYEYEKSRKPGKLIDSVYYANARVILHDENIYRFECSCTPSRAFVQLMDNMNEKPEVFAVSIDPNFSFYLYNDFLSVSPGKREPHGIILQRNKRRYGDLDEPTSTRLAMEGVKLTNGLECKIACNTSKISYVLDTEDFFFRPKRQRQTSSSGTSSSRHHRARQERFLRFLSVS 1393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi06g1453 1393 Gene3D Paired amphipathic helix 62 124 IPR036600 GO:0006355
Mibi06g1453 1393 MobiDBLite consensus disorder prediction 19 34 - -
Mibi06g1453 1393 ProSiteProfiles PAH domain profile. 339 408 IPR003822 GO:0006355
Mibi06g1453 1393 MobiDBLite consensus disorder prediction 242 309 - -
Mibi06g1453 1393 MobiDBLite consensus disorder prediction 1008 1022 - -
Mibi06g1453 1393 Coils Coil 668 688 - -
Mibi06g1453 1393 MobiDBLite consensus disorder prediction 778 792 - -
Mibi06g1453 1393 MobiDBLite consensus disorder prediction 938 976 - -
Mibi06g1453 1393 Pfam Paired amphipathic helix repeat 163 207 IPR003822 GO:0006355
Mibi06g1453 1393 Pfam Paired amphipathic helix repeat 361 405 IPR003822 GO:0006355
Mibi06g1453 1393 Pfam Paired amphipathic helix repeat 79 123 IPR003822 GO:0006355
Mibi06g1453 1393 MobiDBLite consensus disorder prediction 1 48 - -
Mibi06g1453 1393 MobiDBLite consensus disorder prediction 210 231 - -
Mibi06g1453 1393 MobiDBLite consensus disorder prediction 938 957 - -
Mibi06g1453 1393 MobiDBLite consensus disorder prediction 773 845 - -
Mibi06g1453 1393 SUPERFAMILY PAH2 domain 52 125 IPR036600 GO:0006355
Mibi06g1453 1393 Gene3D Paired amphipathic helix 139 211 IPR036600 GO:0006355
Mibi06g1453 1393 ProSiteProfiles PAH domain profile. 56 126 IPR003822 GO:0006355
Mibi06g1453 1393 PANTHER SIN3B-RELATED 56 1255 IPR039774 GO:0003714
Mibi06g1453 1393 MobiDBLite consensus disorder prediction 804 818 - -
Mibi06g1453 1393 SUPERFAMILY PAH2 domain 342 408 IPR036600 GO:0006355
Mibi06g1453 1393 MobiDBLite consensus disorder prediction 991 1078 - -
Mibi06g1453 1393 Gene3D Paired amphipathic helix 337 410 IPR036600 GO:0006355
Mibi06g1453 1393 MobiDBLite consensus disorder prediction 210 309 - -
Mibi06g1453 1393 SUPERFAMILY PAH2 domain 137 209 IPR036600 GO:0006355
Mibi06g1453 1393 Pfam Sin3 family co-repressor 476 565 IPR013194 -
Mibi06g1453 1393 FunFam Paired amphipathic helix protein SIN3 336 410 - -
Mibi06g1453 1393 Pfam C-terminal domain of Sin3a protein 1111 1359 IPR031693 -
Mibi06g1453 1393 FunFam Paired amphipathic helix SIN3-like protein 139 210 - -
Mibi06g1453 1393 ProSiteProfiles PAH domain profile. 140 210 IPR003822 GO:0006355
Mibi06g1453 1393 MobiDBLite consensus disorder prediction 1 16 - -
Mibi06g1453 1393 SMART hdac_interact2seq4b 472 572 IPR013194 -
Mibi06g1453 1393 MobiDBLite consensus disorder prediction 824 844 - -
Mibi06g1453 1393 FunFam Paired amphipathic helix protein Sin3 62 124 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi06g1453 Mibi-ChrMibi06 34928289 34939249 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi06g1453 45 148 WRKY Transcription Factor Family AT4G12020 50.435 4.62e-23 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Mibi06g1453 Sin3a_C 6.8e-55 No_clan