Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi06g1423 ATGGTAAAGATAATGGAAGAAAGTACAGCTAGAATTATGCTATTGTTAATGGCTACCTTAGCCATTACTGTTCCATGCCTCGTAAATGCTAACATAGGAGAGTTCGATGATTATCTCAGAGAAAAAGCAAAGGAAGCTCGGAGATTAGCACTTCAAGCATACGAACCAGACCCTTTGAATGTCACTTCAGAACTCAATATGCATGTTCATTTGGCCATGAATGAGGACATGAAAAACAACAACACAAGAGGGAGGGATCTAAGGGAGAATAAGAACAAAGGACCATGTAGGGCAACCAACCCGATCGACCAATGCTGGAGATGTGATGAAAATTGGGAGAGGGATCGCTTTAAGTTAGCCCGATGTGCGATGGGCTTCGGGCGGAAGACAACTGGCGGATTGGGGGGTAAGATGTACGTCGTGACGGATTCATCAGACGACGATGTAATTAACCCTAAACCCGGAACCCTAAGGTATGGAGCGATCCAAAATGAGCCATTGTGGATCATATTCGCACACAGCATGGTGATCAAATTGAATCAAGAGTTGCTTATAAATTCTGACAAGACTATAGACGGACGTGGAGCCAATATTCTAATAAAGAGTGGAGGTGGACTCACTCTGCAATTTGTTAATAATGTCATCATTCATAATCTTCGAATAAGGAATATCAAATCTAAGAAGGGTGGCATGATAAGGGACGCCTCGGACCATGTGGGTTTTAGAACAAGAAGTGACGGCGATGCCATAAGTATGTTCGGCGCCACCAACATTTGGATCGATCATGTCTCAATGTCAAATGCTGACGACGGCCTGGTCGATGCTATCATGGGTTCCACCGCCATTACCATATCAAATTGCCATATGACTAGACACAATGATGTGATGTTGTTCGGAGCAGGAGATGTGTACGTGGAGGACAAGATTATGCAAGTGACGGTGGCGTTCAACCACTTTGGGAATGGATTGATACAGAGGATGCCGAGGTGTAGGCATGGGTGGTTCCATGTGGTGAATAACTACTACCATAACTGGATAATGTACGCCATCGGAGGAACAGCCAATCCCACCATACTTAGCCAAGGAAACCGATTCAAAGCTCCCAACAATGAAGCCGCCAAGCAGGTCACCAACAGAATGAGTGTGCCACCATTGTTGTGGGAACACTGGAATTGGCAGTCGGAGAATGACCATTTTGTGAATGGAGCTTTCTTTGTGCAATCGGGAACACCTATAACTACAACTAATTTTGACAATGACAATTTGATACATCCTAGACCCGGGATTGATGCACCTGAACTTGTACGCTTTTCGGGTCATATCTCTTGCAAGGCCGGTAGGCCTTGTTAG 1350 0.4489 MVKIMEESTARIMLLLMATLAITVPCLVNANIGEFDDYLREKAKEARRLALQAYEPDPLNVTSELNMHVHLAMNEDMKNNNTRGRDLRENKNKGPCRATNPIDQCWRCDENWERDRFKLARCAMGFGRKTTGGLGGKMYVVTDSSDDDVINPKPGTLRYGAIQNEPLWIIFAHSMVIKLNQELLINSDKTIDGRGANILIKSGGGLTLQFVNNVIIHNLRIRNIKSKKGGMIRDASDHVGFRTRSDGDAISMFGATNIWIDHVSMSNADDGLVDAIMGSTAITISNCHMTRHNDVMLFGAGDVYVEDKIMQVTVAFNHFGNGLIQRMPRCRHGWFHVVNNYYHNWIMYAIGGTANPTILSQGNRFKAPNNEAAKQVTNRMSVPPLLWEHWNWQSENDHFVNGAFFVQSGTPITTTNFDNDNLIHPRPGIDAPELVRFSGHISCKAGRPC 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi06g1423 449 SUPERFAMILY Pectin lyase-like 79 418 IPR011050 -
Mibi06g1423 449 Pfam Pectate lyase 182 365 IPR002022 -
Mibi06g1423 449 Gene3D - 99 442 IPR012334 -
Mibi06g1423 449 PANTHER PECTATE LYASE 18-RELATED 46 447 IPR045032 GO:0030570
Mibi06g1423 449 Pfam Pectate lyase, N terminus 31 83 IPR007524 GO:0030570
Mibi06g1423 449 SMART amb_all 174 371 IPR002022 -
Mibi06g1423 449 PRINTS Pollen allergen Amb family signature 348 367 IPR018082 -
Mibi06g1423 449 PRINTS Pollen allergen Amb family signature 390 414 IPR018082 -
Mibi06g1423 449 PRINTS Pollen allergen Amb family signature 182 198 IPR018082 -
Mibi06g1423 449 PRINTS Pollen allergen Amb family signature 146 171 IPR018082 -
Mibi06g1423 449 PRINTS Pollen allergen Amb family signature 246 267 IPR018082 -
Mibi06g1423 449 PRINTS Pollen allergen Amb family signature 420 443 IPR018082 -
Mibi06g1423 449 PRINTS Pollen allergen Amb family signature 326 345 IPR018082 -
Mibi06g1423 449 PRINTS Pollen allergen Amb family signature 122 139 IPR018082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi06g1423 Mibi-ChrMibi06 34615504 34617631 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi06g1423 12 449 Polysaccharide Lyase AT1G14420 55.333 3.70e-179 507