LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mibi06g1381	ATGGGTCGGTCACCATGCTGCGACAAGGTGGGCTTAAAGAAAGGGCCATGGACTCCTGAGGAAGATCAGAAACTGTTAGCTTATATCGAAGAACACGGCCATGGAAGCTGGCGTGCCTTGCCAGCAAAAGCAGGACTTCAGAGGTGTGGCAAAAGCTGCAGACTGAGATGGACCAATTATCTCAGGCCTGATATAAAGAGAGGGAAGTTCAGCTTGCAAGAAGAGCAAACCATCATTCAACTCCATGCCCTCTTAGGGAACAGGTGGTCGGCTATAGCAACACACTTGCCAAAGAGAACAGATAATGAGATCAAGAACTACTGGAACACGCATCTTAAGAAAAGGTTAGCCAAAATGGGAATCGACCCGGTGACCCACAAGCCCAAGAATGATGCCCTTCTTTCCATCGACGGCCAATCCAAGAGTGCAGCCAACCTTAGTCACATGGCTCAATGGGAGAGTGCTAGGCTTGAAGCTGAAGCAAGGTTGGTTAGAGAATCAAAACTACGTTCACATTCATTGCAGCATCAGCATCAACTTTGCGGCTCTGGGTTCTCATCTTCATCTTCTGCTTCAACTTCTTCAGCTCCAGTCGCAAATAATAAACCAGAGGGACCACCTATTTCCTCATCACGCTCTCTAGATGTTCTTAAGGCATGGAGTAATGGAGGTTGGTTGAAATCTACTGAAGGCCATAATGTTGGTGGCGGCGACCTTGAATCCCCTTCATCTTCCCTGACTTTCTCAGAGAACGCTCCACCAATTATGACCAGTGGACTTGGAGAAAGTACAGTGCCTATGATTGAGTTTGTGGGCTCTTCAGGTTCTTCTGAGACAGGAATTGTGAAAGAAGAAGGTGAGCAAGAATGGAAAGGTTATGAAAGTTCAGTTCATCTTCCAGAATACAAAGATGGTATTGATAATTCCATGTCTTTTGCGTCTAGCCTGCATGAGTTAACAATGTCCATGGAAGGCACGTGGACGTCTGAGACTCTTAGGGCTAGTACTGATGCTATTGCTGAGGAAGGATTATTCACTAGTCTTTTGCTTAATACTAACTCCGATGACCGGAGTTTGTCGGAGGAGGGCGGAGGAGAGTCTAATAATAACTGCGACGTCGGTAATGGTTCAGGCAGTGGAAGTGACCTCTATGAAGATAACAAGAACTACTGGAACAGCATACTTAATTTAGTCAACTCTTCCCCTTCTGACTCTCCTATGTTCTGA	1227	0.4613	MGRSPCCDKVGLKKGPWTPEEDQKLLAYIEEHGHGSWRALPAKAGLQRCGKSCRLRWTNYLRPDIKRGKFSLQEEQTIIQLHALLGNRWSAIATHLPKRTDNEIKNYWNTHLKKRLAKMGIDPVTHKPKNDALLSIDGQSKSAANLSHMAQWESARLEAEARLVRESKLRSHSLQHQHQLCGSGFSSSSSASTSSAPVANNKPEGPPISSSRSLDVLKAWSNGGWLKSTEGHNVGGGDLESPSSSLTFSENAPPIMTSGLGESTVPMIEFVGSSGSSETGIVKEEGEQEWKGYESSVHLPEYKDGIDNSMSFASSLHELTMSMEGTWTSETLRASTDAIAEEGLFTSLLLNTNSDDRSLSEEGGGESNNNCDVGNGSGSGSDLYEDNKNYWNSILNLVNSSPSDSPMF	408

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mibi06g1381	408	Pfam	Myb-like DNA-binding domain	14	61	IPR001005	-
	Mibi06g1381	408	Pfam	Myb-like DNA-binding domain	67	112	IPR001005	-
	Mibi06g1381	408	MobiDBLite	consensus disorder prediction	355	382	-	-
	Mibi06g1381	408	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	62	116	IPR017930	-
	Mibi06g1381	408	SUPERFAMILY	Homeodomain-like	11	108	IPR009057	-
	Mibi06g1381	408	Gene3D	-	69	116	-	-
	Mibi06g1381	408	MobiDBLite	consensus disorder prediction	180	208	-	-
	Mibi06g1381	408	FunFam	MYB-related transcription factor	13	66	-	-
	Mibi06g1381	408	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	9	61	IPR017930	-
	Mibi06g1381	408	ProSiteProfiles	Myb-like domain profile.	9	61	IPR001005	-
	Mibi06g1381	408	ProSiteProfiles	Myb-like domain profile.	62	112	IPR001005	-
	Mibi06g1381	408	FunFam	MYB transcription factor	69	116	-	-
	Mibi06g1381	408	PANTHER	MYB FAMILY TRANSCRIPTION FACTOR	1	196	-	-
	Mibi06g1381	408	Gene3D	-	13	66	-	-
	Mibi06g1381	408	MobiDBLite	consensus disorder prediction	180	212	-	-
	Mibi06g1381	408	SMART	sant	66	114	IPR001005	-
	Mibi06g1381	408	SMART	sant	13	63	IPR001005	-
	Mibi06g1381	408	CDD	SANT	16	61	IPR001005	-
	Mibi06g1381	408	CDD	SANT	69	112	IPR001005	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mibi06g1381	Mibi-ChrMibi06	34126809	34128843	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mibi06g1381	1	408	MYB Transcription Factor Family	AT3G01140	52.857	1.06e-126	367

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB	Mibi06g1381		Myb_DNA-binding	1.5e-15	CL0123