Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi06g1307 ATGGGGAGAGGTAGGGTTCAGCTGAAGAGGATCGAGAACAGTTCGAGCAGGCACGTGACTTTCTCAAAGAGAAAGAACGGATTGGTAAAGAAAGCAAATGAAATCTCTGTTCTGTGTGATGCTCAGGTCGCTTTGATTGTCTTCAATTGCAGAGGCAAACTCACTGAGTTCAACTCTCATTCCTCCAGCATGGATAGCATTCTGGAGCGATATGACAGATGTTCGCACTCTGAGCAACTTGCTGGAACTAACAATGATTCCCAGGGGAACTTGTCTTTGGAACTATTCAAGCTCACTACTAGGGCTGAAGTTTTACAGAAGAATATAAGGAATTATGAAGGAAAGGATCTGGATCCCTTGAGTTTGAAGGAGCTTCAGAGTCTGGAACACCAGCTTGACAATGCTCTTAAGCGCATCCGAACAAAAAAGAACCAAATCATGATGGAATCCGTCTCAGAGAAGCAGAAAAAGGAAAAGGCGTTGAAGGATCAGAACAACATGCTAGCAAAGAAGTTGAAGGAGAAGGAGAAGTCACTGTTGAATGGTGTGGGTCCCCGAATGAGGGAGGAAACCTTAAACCAATGTCCATTCACCTTCAACCTTTCTCCTCCGCAGTTGCTACCACCGCCACCCCCACCTACTCTAACTCTTGGTGGAATATGTGGTGGAGGAGCCATGATGGAGCTGGATTATGAAGCTGAAGCTGGTCCCAGTAACGATATCATCATGCCACCCTGGATGATGTTTCATATGGCTAGTTAA 762 0.4554 MGRGRVQLKRIENSSSRHVTFSKRKNGLVKKANEISVLCDAQVALIVFNCRGKLTEFNSHSSSMDSILERYDRCSHSEQLAGTNNDSQGNLSLELFKLTTRAEVLQKNIRNYEGKDLDPLSLKELQSLEHQLDNALKRIRTKKNQIMMESVSEKQKKEKALKDQNNMLAKKLKEKEKSLLNGVGPRMREETLNQCPFTFNLSPPQLLPPPPPPTLTLGGICGGGAMMELDYEAEAGPSNDIIMPPWMMFHMAS 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi06g1307 253 Gene3D - 13 86 IPR036879 GO:0003677|GO:0046983
Mibi06g1307 253 Coils Coil 154 178 - -
Mibi06g1307 253 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mibi06g1307 253 Coils Coil 95 115 - -
Mibi06g1307 253 Pfam K-box region 85 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mibi06g1307 253 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 166 - -
Mibi06g1307 253 SUPERFAMILY SRF-like 2 80 IPR036879 GO:0003677|GO:0046983
Mibi06g1307 253 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Mibi06g1307 253 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Mibi06g1307 253 Coils Coil 122 145 - -
Mibi06g1307 253 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
Mibi06g1307 253 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Mibi06g1307 253 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Mibi06g1307 253 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mibi06g1307 253 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Mibi06g1307 253 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi06g1307 Mibi-ChrMibi06 33398367 33403567 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi06g1307 1 220 MADS-box Gene Family AT1G26310 46.725 1.76e-60 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Mibi06g1307 K-box 9.2e-24 No_clan