Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi06g1293 ATGGCTAATAACTCTCAACCTCCATCCATCTTCTTCCTCGAAGATGACTTTGAAGAATCAGTCTCCGACGAATATACATCTAATCTCCCATCACCCACTGCCCACGATCACTGGTGTACGGACTCCTCAAACCCCTTTGCCACCGTGTCCTTCGACCATTTGAGCAATCATTCAAATTGGTACTCTGATTCCGACTCCGACTCGGTGAGTTGCTTTGTCACAGATCTTTTTGAAAATCGCTCCTCGGATAACCCTTATCGTCGCTCTAACGATAGTTCTGATATTAATCCGTTTTCGGCCGTTCCTTGCAATCATTCAAATGTTGGGGTTTCTACTATAGTTAGCGAGGCATCGGCCTCTGAAGGGGTTCGTCCGCATAGGGATGGGCTTCGAATTGTAGGGTTTAGTTCTGAGTCGGATTCATGTAGTGATGAAGAGCTTGATAGGGCTATAGAATTCAGCTCTGGTGATAATAATGATGGTAATAGAATTGGTGGGTTTGATGATTTTGATGTCCATTTCTGTTGGGACAGCCTTTGCTTGGAGGATCAAAGGACCCTCAATGAACATTTTGAGTGGGAGGATTTAGAGGAGAGAGCTAATGATGGGGAAGACTTGAGTGTGGTGATTGGTGAGGTTGATGATCGATCAGTAGCATCTGGGTTTTCACATGGAGAAGACTCGGGTGAAGAGGCATTGAGATACCTTGAATGGGAAATTCTGTTAGCGGTCAACAATTTAGAGAGGAATTCGAGTTCGGATCATGGCGCCACTTCGGGCTCCTTATTGACAGTCCAGGATGATGGTTATATGAGCACAGCTGAGTATGATGTATTTTTGGGGCAATTCCTGGAAAATGAGAGTTCCTTGAAGGGTAGTCCTCCTACCGCTAAAAGTGTTATGGAGAATCTTCCTTTAGTAGAATTGACAGAGGAGGACTTGGTGGGGGAGAATGTAGCTTGTGCTGTTTGCAAAGATGAAATCATAGGGAAGGAAAAAGTGAGAAGGCTTCCCTGCTCACACTTTTATCATGGTGACTGCATTATGCCATGGTTGAGCATTCGTAATACGTGCCCTGTTTGTCGGTTTGAACTGCCCACAGATGATCCTGATTATGAGCAAAGGAAGAGTCAGAGAACTGCTCATGAAGCTGCCCATGATCTGTTTGAGTTTGCACTGTAG 1182 0.4501 MANNSQPPSIFFLEDDFEESVSDEYTSNLPSPTAHDHWCTDSSNPFATVSFDHLSNHSNWYSDSDSDSVSCFVTDLFENRSSDNPYRRSNDSSDINPFSAVPCNHSNVGVSTIVSEASASEGVRPHRDGLRIVGFSSESDSCSDEELDRAIEFSSGDNNDGNRIGGFDDFDVHFCWDSLCLEDQRTLNEHFEWEDLEERANDGEDLSVVIGEVDDRSVASGFSHGEDSGEEALRYLEWEILLAVNNLERNSSSDHGATSGSLLTVQDDGYMSTAEYDVFLGQFLENESSLKGSPPTAKSVMENLPLVELTEEDLVGENVACAVCKDEIIGKEKVRRLPCSHFYHGDCIMPWLSIRNTCPVCRFELPTDDPDYEQRKSQRTAHEAAHDLFEFAL 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi06g1293 393 ProSiteProfiles Zinc finger RING-type profile. 321 362 IPR001841 -
Mibi06g1293 393 SMART ring_2 321 361 IPR001841 -
Mibi06g1293 393 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 207 366 - -
Mibi06g1293 393 FunFam E3 ubiquitin-protein ligase RING1-like 282 368 - -
Mibi06g1293 393 Pfam Ring finger domain 321 362 IPR001841 -
Mibi06g1293 393 SUPERFAMILY RING/U-box 302 369 - -
Mibi06g1293 393 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 282 368 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi06g1293 Mibi-ChrMibi06 33282879 33284060 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi06g1293 129 377 C3H Transcription Factor Family AT3G02340 41.603 2.64e-45 159