Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi06g1234 ATGGGCCGTAGGAAGATAAAGATGGAGATAGTGATGGACGCAGCGTCGAGATTGGTAACATTCTCAAAGCGCCGTAACGGACTGTTCAAGAAGGCGAACGAGCTGGCAATCCTGTGCGGCGCAGAGATCGCCATTGTTGTGTTCTCGCCAGGTGGCAAGCCCTTCTCCTTCGGCCATCCCTCCGTCAATATCGTCACTCAAAGATTTCTCCAAGACGGCGACGACGGCGAGGAGGCAAAACCGAAGAAGGATCGACGGAGGGCGGAGAAATTGAACAAGAGGTTGGCGAATTTGACGAAGGAATTGGAGGAAGAGAAGAAGAAGGGGGTGATTTTGGACAAGGAGATACAGGAGAAGGAGAGGGGGCTTGGGCTTGGGCTTGGGCTTGGGCCTGGGATGGGCCCAGATGAGGTGAGGAGGCTTGAGGGGTTGAAGAGGTCGCTGGAGAGAGTGAGGGAGGAGGTGAAGCTGAGGAAGAGAGAGATGGAGGCAGCATCGTCTTTGCTGGTGCTTTCAGAGAAATTACAGTTCAAGGAAGAAGAAGACAGTATTAATGGAAACTAG 564 0.5301 MGRRKIKMEIVMDAASRLVTFSKRRNGLFKKANELAILCGAEIAIVVFSPGGKPFSFGHPSVNIVTQRFLQDGDDGEEAKPKKDRRRAEKLNKRLANLTKELEEEKKKGVILDKEIQEKERGLGLGLGLGPGMGPDEVRRLEGLKRSLERVREEVKLRKREMEAASSLLVLSEKLQFKEEEDSINGN 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi06g1234 187 SUPERFAMILY SRF-like 1 71 IPR036879 GO:0003677|GO:0046983
Mibi06g1234 187 FunFam Agamous-like MADS-box protein AGL62 13 79 - -
Mibi06g1234 187 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Mibi06g1234 187 Gene3D - 13 108 IPR036879 GO:0003677|GO:0046983
Mibi06g1234 187 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Mibi06g1234 187 PANTHER MADS BOX PROTEIN 3 156 - -
Mibi06g1234 187 Coils Coil 138 168 - -
Mibi06g1234 187 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 13 57 IPR002100 GO:0003677|GO:0046983
Mibi06g1234 187 Coils Coil 85 115 - -
Mibi06g1234 187 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mibi06g1234 187 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Mibi06g1234 187 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi06g1234 Mibi-ChrMibi06 32553583 32554146 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi06g1234 1 109 Type I MADS-box Gene Family AT2G34440 57.143 1.23e-38 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mibi06g1234 SRF-TF 1.7e-23 No_clan