Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi06g1210 ATGAGCTTCTCATCTTCAGCTACGAGCAACATGAAGGCCATCGTTAACAGAGACAAGGCGATTGCTCAGTACAGTGCCGATGCTGAGATTTTCGCGGAGTTTGGGCGTTCTAGCGTCACAGGAAAATCTTTTGATTACTCGAAGTCGGTGCTTTACCCTCCGAAATCGGTGTCGGAAGAGAAAATGACGAATTATTTATCAAATATCCAGAGAGGGGGTCTCATTCAGCCATTTGGTTGTATGATTGCAATTGAGGAAGCCACTTTCAAGATCATAAGCTATAGTGAGAATTGCTTTGAATTGTTGGGTTTAGAAAGGCGTTTTGATTCGAAACAACCGATGAATCTGATCGGAGTTGATGTTAGAACATTGTTCACGTTTTCTTCTGAGGTTTCCTTTGTAAAAGCTGTGGCGACAGAGGAAATATCGCTTTTGAACCCTATTTGGGTGTATTCAAGGACAACTCAGAAACCATTCTATGCAATATTGCACAGGATTGATGTGGGGATTGTGATTGATTTAGAACCTGCTCGTACCAATGATCATGCTCTGTCACTCGCTGGAGCAGTGCAGTCACAGAAACTTGCAGTTCGAGCAATTTCAAGACTGCAATCTCTTCCTGGGGGAGATATTGGTGTGTTGTGTGATACAGTTGTTGAAGAAGTCCAGAAGCTTACTGGATATGATAGGGTTATGGTATATAAGTTCCATGAGGATGATCATGGTGAAGTTGTATCAGAAATTAGGAGGTCAGACTTAGAGCCTTATTTGGGTTTACATTACCCTTCCACTGATATTCCTCAAGCTGCTCGCTTCTTATTTAAGCAAAACCGTGTGAGGATGATATGTGATTGCCATGCAAATCCAGTTAAGGTCATACAGTGTCAACAATTAAGGAAACCACTTTGCCTGGTCAATTCAACCCTTAGGTCACCACATGATTGCCACGCACAATATATGGCTAATATGGGCTCTGTTGCTTCTTTGGTGATAGCAGTTATAGTCAATGGAAATGATGCAACAAAGCTTTGGGGTTTGCTAGTTTGCCATCACACTTCACCACGTCACGTGCCTTTCCCTCTTCGCTATGCTTGTGAGTTCCTCACGCAGGCTTTTGGACTGCAGCTTTATATGGAGATGCTACGAGCAGCACAAATGGCAAAGAGAATGCTTAGGACACAGACCTTACTATGTGATATGCTTCTCCGTGATGCCCCATTGGGTATTGTCACTCAGTCTCCAAGTATCATAGATCTTGTGAAGTGTGATGGGGCAGCATTGTATTATGATGGAGATTGTTGGCTATTGGGCACCACCCCAACTGAGTCACAGGTAAAAGACATTGCAGAATGGCTACTCAGTAATCATGGCGACTCTACTGGTTTGAGCACTGATAGTTTGGCTGAAGCTGGTTATCCAGGAGCTGCTTTACTGGGGAATGCAGTTTGTGGCATGGCAACAGCAAGAATAAATATGAGAGATTTTTTATTCTGGTTCAGATCGCACGCTGCCAAGGAAGTTCAATGGGGAGGAGCCAAGTACCATCAAAAGGATAAAGATGATGGAGGAAAATTGAATCCAAGATCATCATTTGAAGCTTTTCTTGAAGTAAACAAAAGCAAAAGCTTGCCCTGGGACGTGTCAGAAATTAATATTATTCACTCATTGCAGCTTATAGTGCGAGAATCCTTCCAAAACACACAGAACTTTGGTCCTAAGACACTTTGTTGGGCTCAGCGTAGTGATACTACAATGGCTGGGATGGATGAACTCAGTTCGGTGGCATTTGAGATGGTTAGACTAATTGAGACAGCAACAGTTCCAATTTTTGAAGTAAATTCGGCTGGTCTAATCAATGGATGGGATGCAAAAATTGCAGAGTTAACTGGGCTGCAGGCTTGTGAAGCTATGGGGAAATCCCTAGTAAATGAAATAGTCCATGCTGACTCACATGAAACTGTTGAGAATATTTTAAGCAGAGCCTTGCAAGGTCAGGAGGACAAAAACGTTGAGTTGAAACTAAAGTATTTTGGGCTTCAACAACAAAAGTCAGTTATATATATAAGGGCTAATGCTTGCACAAGTAGGGATCGCAGAAATGCTATGGTTGGGGTATGCATTGTGGGTCAAGATATCACTTATGAAAAAGTTTTCCAAAACAAATTTATCAAGTTGGAAGGTGATTACAAGGCTATTATCCAGAGTCTCAATCCACTGATTCCACCTATATTTGCTTCTGATGAGAATGCCTGCTGCTCTAAATGGAATGCAGCCATGGAAAGGTTGACAGGTTGGAAGAGAGATGAAGTTATAGGAAAACTTCTACCAGGGGAAATATTTGGGGTTCTATGTAAATTTAAAGGCCAAGACACATTGACCAACTTTATGATTTCATTGTATAAAGGAATCAGTGGTCAAGATTCTGAGAAATTCTCTTTTGGATTTTATAATAGAAAAGGAGAATTTGTGGAGGTTTTTTTAGCAGCAAACAAGAGGAATGATGCATGTGGGAATACAATTGGCAGTTTCTGCTTCTTGCAGATTGTATCATCAGACCCGAATCCACGCTTAGAAGGACAGAAGTCAGAGGGTAAGGCAAACTTTTCTAAATTCAAGGAGCTGGCATATATACTTCAAGAGATGAAGAGTCCTTTGAATGGTATGCGCTTCACACACCAACTTTTGGAGAATACGGCTGTCTCAGAAAATCAAAAACAGTTTCTTGATACTAGCAATGCGTGTGAGAGGCAGATTGTGTCCATTATTGAGAACACAGATTTAGGAAGCATTGACGAGGGCACCATGAAGCTAAACGATGAAGAATTTCTTATGGGAAATATATTGGATGCTATTGTAAGTCAGGTCATGATCTCGATAAGAGGGAAAAACTTGCAGCTGTTTCACGAAATTCCTGATGATATCAAGACACGTACCCTATATGGTGATCAAATTAGGCTTCAGGTGGTCCTGTCTGACATTTTGCGTAATGTGGTGAATCACACACCATCTCCTAAAGGCTGGATAGAAATTAAGATTTCACCTGGTTTGAAGATAATGCAAGATGGCAACGAGTTTATCCATCTCCAGTTCAGAATGACACATGCAGGTCAAGGCCTTCCTTCTGCTGTTCTTCAGGATATGTTTGAAGCAGAGGATCAATGGACTACACAGGAAGGTTTAGGGCTATATATGTCCCGGAAAATCCTCAGTAGGATGAAGGGTCGTGTTCACTATGTAAGAGAACATAACAAGTGCTACTTCCTCATTGATCTTAAACTTAGAGCAAGAAAAATAAAGGCAGAGGAATTGGCTACCCGAGACAGGCATGTCTAA 3333 0.4155 MSFSSSATSNMKAIVNRDKAIAQYSADAEIFAEFGRSSVTGKSFDYSKSVLYPPKSVSEEKMTNYLSNIQRGGLIQPFGCMIAIEEATFKIISYSENCFELLGLERRFDSKQPMNLIGVDVRTLFTFSSEVSFVKAVATEEISLLNPIWVYSRTTQKPFYAILHRIDVGIVIDLEPARTNDHALSLAGAVQSQKLAVRAISRLQSLPGGDIGVLCDTVVEEVQKLTGYDRVMVYKFHEDDHGEVVSEIRRSDLEPYLGLHYPSTDIPQAARFLFKQNRVRMICDCHANPVKVIQCQQLRKPLCLVNSTLRSPHDCHAQYMANMGSVASLVIAVIVNGNDATKLWGLLVCHHTSPRHVPFPLRYACEFLTQAFGLQLYMEMLRAAQMAKRMLRTQTLLCDMLLRDAPLGIVTQSPSIIDLVKCDGAALYYDGDCWLLGTTPTESQVKDIAEWLLSNHGDSTGLSTDSLAEAGYPGAALLGNAVCGMATARINMRDFLFWFRSHAAKEVQWGGAKYHQKDKDDGGKLNPRSSFEAFLEVNKSKSLPWDVSEINIIHSLQLIVRESFQNTQNFGPKTLCWAQRSDTTMAGMDELSSVAFEMVRLIETATVPIFEVNSAGLINGWDAKIAELTGLQACEAMGKSLVNEIVHADSHETVENILSRALQGQEDKNVELKLKYFGLQQQKSVIYIRANACTSRDRRNAMVGVCIVGQDITYEKVFQNKFIKLEGDYKAIIQSLNPLIPPIFASDENACCSKWNAAMERLTGWKRDEVIGKLLPGEIFGVLCKFKGQDTLTNFMISLYKGISGQDSEKFSFGFYNRKGEFVEVFLAANKRNDACGNTIGSFCFLQIVSSDPNPRLEGQKSEGKANFSKFKELAYILQEMKSPLNGMRFTHQLLENTAVSENQKQFLDTSNACERQIVSIIENTDLGSIDEGTMKLNDEEFLMGNILDAIVSQVMISIRGKNLQLFHEIPDDIKTRTLYGDQIRLQVVLSDILRNVVNHTPSPKGWIEIKISPGLKIMQDGNEFIHLQFRMTHAGQGLPSAVLQDMFEAEDQWTTQEGLGLYMSRKILSRMKGRVHYVREHNKCYFLIDLKLRARKIKAEELATRDRHV 1110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi06g1210 1110 ProSiteProfiles Histidine kinase domain profile. 876 1095 IPR005467 -
Mibi06g1210 1110 ProSiteProfiles PAS repeat profile. 594 665 IPR000014 -
Mibi06g1210 1110 SUPERFAMILY PYP-like sensor domain (PAS domain) 600 708 IPR035965 -
Mibi06g1210 1110 Pfam GAF domain 210 379 IPR003018 GO:0005515
Mibi06g1210 1110 SMART gaf_1 210 390 IPR003018 GO:0005515
Mibi06g1210 1110 PIRSF Phytochrome_conventional 1 1102 IPR012129 GO:0006355|GO:0009585|GO:0009881|GO:0017006|GO:0042803
Mibi06g1210 1110 Gene3D - 384 557 IPR043150 -
Mibi06g1210 1110 TIGRFAM sensory_box: PAS domain S-box protein 601 719 IPR000014 -
Mibi06g1210 1110 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 210 370 IPR016132 -
Mibi06g1210 1110 CDD PAS 739 847 IPR000014 -
Mibi06g1210 1110 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 945 1091 IPR036890 -
Mibi06g1210 1110 FunFam Phytochrome 384 516 - -
Mibi06g1210 1110 Gene3D - 932 1098 IPR036890 -
Mibi06g1210 1110 PRINTS Phytochrome signature 125 147 IPR001294 GO:0006355|GO:0009584
Mibi06g1210 1110 PRINTS Phytochrome signature 494 513 IPR001294 GO:0006355|GO:0009584
Mibi06g1210 1110 PRINTS Phytochrome signature 527 545 IPR001294 GO:0006355|GO:0009584
Mibi06g1210 1110 PRINTS Phytochrome signature 597 613 IPR001294 GO:0006355|GO:0009584
Mibi06g1210 1110 PRINTS Phytochrome signature 710 730 IPR001294 GO:0006355|GO:0009584
Mibi06g1210 1110 PRINTS Phytochrome signature 616 631 IPR001294 GO:0006355|GO:0009584
Mibi06g1210 1110 PRINTS Phytochrome signature 225 244 IPR001294 GO:0006355|GO:0009584
Mibi06g1210 1110 PRINTS Phytochrome signature 409 429 IPR001294 GO:0006355|GO:0009584
Mibi06g1210 1110 PRINTS Phytochrome signature 690 707 IPR001294 GO:0006355|GO:0009584
Mibi06g1210 1110 PRINTS Phytochrome signature 310 331 IPR001294 GO:0006355|GO:0009584
Mibi06g1210 1110 SMART pas_2 596 663 IPR000014 -
Mibi06g1210 1110 SMART pas_2 727 797 IPR000014 -
Mibi06g1210 1110 SMART HKATPase_4 981 1095 IPR003594 -
Mibi06g1210 1110 SUPERFAMILY PYP-like sensor domain (PAS domain) 742 844 IPR035965 -
Mibi06g1210 1110 Gene3D PAS domain 68 313 - -
Mibi06g1210 1110 FunFam Phytochrome 741 849 - -
Mibi06g1210 1110 Pfam His Kinase A (phospho-acceptor) domain 873 933 IPR003661 GO:0000155|GO:0007165
Mibi06g1210 1110 Gene3D PAS domain 596 716 - -
Mibi06g1210 1110 CDD HATPase_Phy-like 980 1093 IPR044767 -
Mibi06g1210 1110 ProSiteProfiles PAS repeat profile. 728 773 IPR000014 -
Mibi06g1210 1110 Pfam PAS fold 728 847 IPR013767 GO:0006355
Mibi06g1210 1110 Pfam PAS fold 597 712 IPR013767 GO:0006355
Mibi06g1210 1110 SUPERFAMILY GAF domain-like 388 566 - -
Mibi06g1210 1110 FunFam Phytochrome 590 722 - -
Mibi06g1210 1110 Gene3D - 191 540 IPR029016 -
Mibi06g1210 1110 SUPERFAMILY PYP-like sensor domain (PAS domain) 69 180 IPR035965 -
Mibi06g1210 1110 Pfam PAS fold 65 177 IPR013654 GO:0006355
Mibi06g1210 1110 PANTHER OS08G0260000 PROTEIN 61 930 - -
Mibi06g1210 1110 CDD HisKA 874 924 IPR003661 GO:0000155|GO:0007165
Mibi06g1210 1110 ProSitePatterns Phytochrome chromophore attachment site signature. 310 319 IPR013516 -
Mibi06g1210 1110 SUPERFAMILY GAF domain-like 190 376 - -
Mibi06g1210 1110 Gene3D PAS domain 741 852 - -
Mibi06g1210 1110 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 981 1093 IPR003594 -
Mibi06g1210 1110 CDD PAS 605 712 IPR000014 -
Mibi06g1210 1110 Pfam Phytochrome region 392 567 IPR013515 GO:0006355|GO:0009584
Mibi06g1210 1110 SMART HisKA_10 869 933 IPR003661 GO:0000155|GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi06g1210 Mibi-ChrMibi06 32294298 32298967 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi06g1210 4 1094 Histidine Kinase Gene Family AT4G18130 61.191 0.0 1417