Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi06g1146 ATGGCTTCAGGGGCTATATTCTCGTCTCTCAGGCGGCGTAGGTCGCCGTCGTTGGAAGCTTTTCTTGCTCCGGTTGATTTCACAGATGTTTCCTTGGTTCAAACTCTCGTGTCCGTGGCTACCGAGGTTGTCTCTTGCTTTTCTGGGCATTCGTTCTTCTTCCAACGCAGGAATTCCCGGTCGCTTATCAGAAAGGTTGAGGTAATTCAGTTGCTTTTGGAGTATCTACGTGATAGTGAAACGGATATTCCGATGACAGGGTTGATTTGTCTTAAGGAGCTTTATCTTGTTCTGTATCGGTCCAAGATTTTGCTTGATTATTGCTTGCAGTCTAGTAAGTTATGGCTTTTGCTTCAGAACCATTCTGTTTCTGGTCATTTCCATGACTTGAACAAGGAAATTTCTAATCTTTTTGATGTATTCCCGATTATGGATGTTGAATTGAGCGAGGATGTTAGAGAACAGATTGAGCTATTGCAGAAACAATCGAGTAGAGCTAAGTTGTTTATTGACATGAAAGACGATGAGCTCAGGACTGAGTTCTTGTCGTATCTTGATGAATTTGAGAACGGGCGAGTTCCTGATTCAGCTGGGTTGAGATCATTTTTTATTAAGAAATTGCAGATTCTGGATGCGAAGAGTTTCAGAACAGAAATTGAGTCGTTGGAGGAGCAGATTGTTAATCATGAAGGAGATGTTGAACCAACGATTTCTGTGCTAAATGGTTTGGTTGCATTGACACGATATTCTAGATTTTTGCTATTTGGATTTGAGGAAGATGAAGTTGAATCAGAAAATGGAAACCAGATTAAAAAACTGAAGAAGAAGAAGAAATTGATCACTAAAGAAATTGCTGAAACATTTGTGACTATTCCTAAGGACTTTTACTGTCCCATATCGTTGGATTTGATGAGTGACCCTGTGATAGTCTCCACAGGACAAACATATGATAGAAGCTCTATATCTAGATGGTTGGACGAAGGGCATTGTACTTGTCCCAAAACAGGACAAGTTCTTTCCCACACAAAGCTTGTCCCGAATCGCGCTCTGAAGAATTTGATCATGAAGTTTAGCACTGCACATGGAATCTCTCATGAATCGCTGGAGATGGTAGATGTAGCGCCGGATACTTTTTCAATGGCTTCTCCGTCAAAGGCTGCCCTCGAAGCTAACCGGGCAACTGCGCTGCTTCTCATTCAGCAGCTGGGGAATGGATCCCAAGCTGCTGAGACTATAGCTGCCCGGGAGATACGTTTGCTTGCAAAAACAGGCAAGGAGAATCGCGCATTCATCGCAGAAGCCGGGGCGATTCCTCGCCTTTGTAAACTACTTTCATCTCCTAATGCCATTGCTCAGGAGAATTCAGTGACAGCATTGCTCAACCTGTCAATATATGAGAAGAACAAGAGCCGGATCATCGAGGAAGAAGGTTGTCTGGAATCGATAGTTGATGTCTTGAGATTAGGCCACACAACAGAGGCAAGAGAGAATGCTGCAGCCACCTTGTTCAGCCTCTCAGCTGTCCATGATTATAAGAAGAGAATCGCAGACGAGCCGGGAGCAATCGAAGCCCTGGCCCGGCTTTTGCAAGAGGGAAATTTAAGAGGAAAGAAAGATGCAGTAACAGCCTTATTCAATCTCTCCACACACACTGATAACTGCCTTAGAATGATTGAAGCCGGAGCATTAACAGCTCTAGTTGGCGCCTTGAGGACGGAAGGAGTAGCTGAGGAAGCAGCAGGCGCTCTTGCCTTGATTGTCAGGCAACCTATGGGGGCCAAGGCGGTGGTGAAGGAGGAGGAAGCATTGGCTGGGTTGATGGGAATGATGCGTTGTGGAACCGCACGAGGGAAAGAGAATGCCGTGGCAGCATTGCTTGAACTGTGCCGGAGTGGAGGCGCTGCTGCAACCGAGAGGGTGGTGAGGGCACCGGCTTTGGCCGGATTGCTCCAAACCCTACTTTTTACCGGAACTAAGAGGGCTAGAAGAAAAGCAGCTTCACTTGCTAGAGTGTTTCAGAGATGTGAAAATGCACATCTACATTATGGTGGATTAGGTGTAGGATATGCATATGCTAGCAATTCAGCTTCTGGTAGAGATACAACTTTTGCTGGGGATGTTTCAGTTCTACCATTGCCTATTTCTGTCCCCGTCTTGTAG 2160 0.4542 MASGAIFSSLRRRRSPSLEAFLAPVDFTDVSLVQTLVSVATEVVSCFSGHSFFFQRRNSRSLIRKVEVIQLLLEYLRDSETDIPMTGLICLKELYLVLYRSKILLDYCLQSSKLWLLLQNHSVSGHFHDLNKEISNLFDVFPIMDVELSEDVREQIELLQKQSSRAKLFIDMKDDELRTEFLSYLDEFENGRVPDSAGLRSFFIKKLQILDAKSFRTEIESLEEQIVNHEGDVEPTISVLNGLVALTRYSRFLLFGFEEDEVESENGNQIKKLKKKKKLITKEIAETFVTIPKDFYCPISLDLMSDPVIVSTGQTYDRSSISRWLDEGHCTCPKTGQVLSHTKLVPNRALKNLIMKFSTAHGISHESLEMVDVAPDTFSMASPSKAALEANRATALLLIQQLGNGSQAAETIAAREIRLLAKTGKENRAFIAEAGAIPRLCKLLSSPNAIAQENSVTALLNLSIYEKNKSRIIEEEGCLESIVDVLRLGHTTEARENAAATLFSLSAVHDYKKRIADEPGAIEALARLLQEGNLRGKKDAVTALFNLSTHTDNCLRMIEAGALTALVGALRTEGVAEEAAGALALIVRQPMGAKAVVKEEEALAGLMGMMRCGTARGKENAVAALLELCRSGGAAATERVVRAPALAGLLQTLLFTGTKRARRKAASLARVFQRCENAHLHYGGLGVGYAYASNSASGRDTTFAGDVSVLPLPISVPVL 719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi06g1146 719 SMART arm_5 424 464 IPR000225 GO:0005515
Mibi06g1146 719 SMART arm_5 550 588 IPR000225 GO:0005515
Mibi06g1146 719 SMART arm_5 465 507 IPR000225 GO:0005515
Mibi06g1146 719 SMART arm_5 509 549 IPR000225 GO:0005515
Mibi06g1146 719 SMART arm_5 590 630 IPR000225 GO:0005515
Mibi06g1146 719 Gene3D - 511 670 IPR011989 -
Mibi06g1146 719 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 435 477 IPR000225 GO:0005515
Mibi06g1146 719 CDD RING-Ubox_PUB 295 337 IPR045210 -
Mibi06g1146 719 Pfam Armadillo/beta-catenin-like repeat 518 548 IPR000225 GO:0005515
Mibi06g1146 719 Pfam Armadillo/beta-catenin-like repeat 425 463 IPR000225 GO:0005515
Mibi06g1146 719 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 290 366 IPR013083 -
Mibi06g1146 719 SMART Ubox_2 294 357 IPR003613 GO:0004842|GO:0016567
Mibi06g1146 719 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 520 562 IPR000225 GO:0005515
Mibi06g1146 719 PANTHER U BOX DOMAIN-CONTAINING 60 675 - -
Mibi06g1146 719 Pfam U-box domain 291 361 IPR003613 GO:0004842|GO:0016567
Mibi06g1146 719 SUPERFAMILY RING/U-box 279 364 - -
Mibi06g1146 719 FunFam RING-type E3 ubiquitin transferase 366 688 - -
Mibi06g1146 719 Gene3D - 27 144 IPR036537 GO:0007166
Mibi06g1146 719 FunFam RING-type E3 ubiquitin transferase 288 364 - -
Mibi06g1146 719 Gene3D - 377 510 IPR011989 -
Mibi06g1146 719 SUPERFAMILY ARM repeat 397 672 IPR016024 -
Mibi06g1146 719 ProSiteProfiles U-box domain profile. 290 364 IPR003613 GO:0004842|GO:0016567
Mibi06g1146 719 Coils Coil 212 232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi06g1146 Mibi-ChrMibi06 31277566 31279725 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi06g1146 1 719 U-box Gene Family AT1G29340 67.391 0.0 921