Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi06g1134 ATGAAAACACCGAAGAAGTCATCATCATCCAGTAGAGGCCACCACAAGTTCGTGGGTGTTCGTCAGAGGCCATCGGGAAGATGGGTGGCTGAGATCAAAGACTCAGTTCAGAAAGTCAGGCTCTGGCTTGGAACCTTCGACTCTGCTGAAGATGCGGCTCGAGCCTATGACTCCGAGGCTCGAGCCTTGCGTGGCCCAAATTCTCGCACCAACTTTGATCTGCCGGTTCATCATTCCTTTGGGAACTCGCAGGAGAACATGGAGCCATTCTCATTCGAGGTTGGTGGTGGTGATGATTCATGTAATGGACTTGTTGGTGCTCTAAGAGCCAAACTGTCAGATGATAAGACAAAGGCATTATCATTATTGAAGCCTAGCTCTGTTGTTATTGGGTCTAGTGTGGATACAACAGAAAGATCATTAATACCCTTAAATTCAAATCCCAGAAAAGGTAAGAGAGTGATTGTTTCTGATGTTGCAACAAATGGAGAGGCATGGCAGCCAGAGGCGATGGAACAGGGTTGTGGAAGTGGGTTGCTTGTGGATGCTATTGGTGGAGGCAGGGATTCTTCTTTGTCTTGGCCATTTTCTGCGTTTGAGTTGACATGTTCACATCATCATGGTTTATCTAACACTACTGATCATAACATCAAATTAGTGAATCAGATGGGTGGAACTTCATTGTCGTCTGAGAGTTTCTGGAGTGATACGCATGAGCAACAACAGTTCGTAAACTATGATAACAATGCCACTTGTTTTGCTACTTCTGCTGCCTCTTGGGATCCCCTCCTCTTTGCTTCTTCTGGCGAGCTTGGTTGA 819 0.4615 MKTPKKSSSSSRGHHKFVGVRQRPSGRWVAEIKDSVQKVRLWLGTFDSAEDAARAYDSEARALRGPNSRTNFDLPVHHSFGNSQENMEPFSFEVGGGDDSCNGLVGALRAKLSDDKTKALSLLKPSSVVIGSSVDTTERSLIPLNSNPRKGKRVIVSDVATNGEAWQPEAMEQGCGSGLLVDAIGGGRDSSLSWPFSAFELTCSHHHGLSNTTDHNIKLVNQMGGTSLSSESFWSDTHEQQQFVNYDNNATCFATSAASWDPLLFASSGELG 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi06g1134 272 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 7 110 - -
Mibi06g1134 272 Pfam AP2 domain 16 65 IPR001471 GO:0003700|GO:0006355
Mibi06g1134 272 SMART rav1_2 16 79 IPR001471 GO:0003700|GO:0006355
Mibi06g1134 272 SUPERFAMILY DNA-binding domain 16 74 IPR016177 GO:0003677
Mibi06g1134 272 FunFam ethylene-responsive transcription factor RAP2-11 15 74 - -
Mibi06g1134 272 Gene3D AP2/ERF domain 15 74 IPR036955 GO:0003700|GO:0006355
Mibi06g1134 272 CDD AP2 16 73 IPR001471 GO:0003700|GO:0006355
Mibi06g1134 272 PRINTS Ethylene responsive element binding protein signature 39 55 IPR001471 GO:0003700|GO:0006355
Mibi06g1134 272 PRINTS Ethylene responsive element binding protein signature 17 28 IPR001471 GO:0003700|GO:0006355
Mibi06g1134 272 ProSiteProfiles AP2/ERF domain profile. 16 73 IPR001471 GO:0003700|GO:0006355
Mibi06g1134 272 MobiDBLite consensus disorder prediction 1 20 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi06g1134 Mibi-ChrMibi06 31154908 31155726 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi06g1134 3 88 AP2-EREBP Transcription Factor Family AT5G19790 60.227 4.42e-27 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Mibi06g1134 AP2 7.9e-12 CL0081