Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi06g1092 ATGGATTTCTCCAAGAAGCGCAAAACCGAAGAGAACGGAACCGACGATTCTGTGCCCTCAACAACCCCACTTGGAGCAGACGACATCCGCAAGATTCTCCAACCCTTCTCGCAAGAACAGCTCATCGACCTTCTTCAATCAGCCGCTCTTAATCACCCTGACGTTCTTGAATCGATCCGTTCCGTCGCAGACCGTGATTCCACCCTTCGAAAACTCTTCGTTCGTGGCCTTGCAGGTGAAACCACCACGGAGACACTCAGCAGTGTTTTTTCCTCCTATGGGGTGCTCGACGAAGCGATTGTTATCTTCGATAAAAACACTGGGAAGTCCAAAGGTTACGGCTTTGTGACGTTTAAGCATGTTGATGGTGCTATATTGGCTTTGAAAGAACCCAGCAAGAAAATTGACGGTAGAATGACGGTGACACAGCTCGCGGCTGCTGGATTATCGGCGAGCCAAGGGGCGAATGCGGCCACCGCGGCGACGAGCGATGTTTCGACGCGAAAAGTTTTCGTGGGTAATGTGCCGTTTGATATCCCGTCGGAGAGGTTGTTGAGTTACTTTTCTGCATTTGGGGAAGTTGAGGAAGGGCCTCTTGGGTTTGACAAAGGTAGTGGAAAGTCCAAGGGTTTTGCATTCTTTGTGTATAAAACGGAGGAGGGTGCTAGGGCGTCTTTAGTTGAGCCTGTGAAAACTATTGATGGGCATCAAGTGCTTTGTAAATTGGCCATGGATAACAAGAAGGGGAAATCAGGAGGTGCTCCTAATCAGGGCCCTCCTGGATTACCAGTTAGTGGCATGGGAGGACAACAAACGCAACCATCTTTACCTGGCCCTATGATGGGATCAAATTATGGTGGTCATGGCTCTTCATATGGGGGATATGGTGGTGGGCCTCAGGGTCCCATGTCAGTGCCTGGTAGTAATTATGGGTTGCAGTCTTCAATGCCTCCATATGGTACTCAGGTTCCATCTAGCTTAACTCCCAATAGTGGTGGGGGGTATGGTCCTGGAATTGGAGGGGCTTATAGTGGCCCTCAGTTCAGTGGGCCAACTTCTGGTGATTATGGAGCTAGGATGCCTTCAACTTCTGCTGGAATGCCTTCCGGAGGATATCCAGATGGTTCCCATTATAATTTGCCCTCATCTGGTGTTCCCTCGCAGCATCAACAGCCTATGCAAATTCCAAGAATGGCTCCTGGAGGAATGTATCAAGGCATGCCGCCCTACTACTGA 1236 0.4992 MDFSKKRKTEENGTDDSVPSTTPLGADDIRKILQPFSQEQLIDLLQSAALNHPDVLESIRSVADRDSTLRKLFVRGLAGETTTETLSSVFSSYGVLDEAIVIFDKNTGKSKGYGFVTFKHVDGAILALKEPSKKIDGRMTVTQLAAAGLSASQGANAATAATSDVSTRKVFVGNVPFDIPSERLLSYFSAFGEVEEGPLGFDKGSGKSKGFAFFVYKTEEGARASLVEPVKTIDGHQVLCKLAMDNKKGKSGGAPNQGPPGLPVSGMGGQQTQPSLPGPMMGSNYGGHGSSYGGYGGGPQGPMSVPGSNYGLQSSMPPYGTQVPSSLTPNSGGGYGPGIGGAYSGPQFSGPTSGDYGARMPSTSAGMPSGGYPDGSHYNLPSSGVPSQHQQPMQIPRMAPGGMYQGMPPYY 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi06g1092 411 PANTHER GEO13361P1-RELATED 53 307 - -
Mibi06g1092 411 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 70 147 IPR000504 GO:0003723
Mibi06g1092 411 SUPERFAMILY RNA-binding domain, RBD 60 145 IPR035979 GO:0003676
Mibi06g1092 411 SUPERFAMILY RNA-binding domain, RBD 155 257 IPR035979 GO:0003676
Mibi06g1092 411 MobiDBLite consensus disorder prediction 1 25 - -
Mibi06g1092 411 Gene3D - 61 149 IPR012677 -
Mibi06g1092 411 CDD RRM_RBM24_RBM38_like 70 145 - -
Mibi06g1092 411 Gene3D - 150 301 IPR012677 -
Mibi06g1092 411 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 168 256 IPR000504 GO:0003723
Mibi06g1092 411 SMART rrm1_1 169 241 IPR000504 GO:0003723
Mibi06g1092 411 SMART rrm1_1 71 143 IPR000504 GO:0003723
Mibi06g1092 411 MobiDBLite consensus disorder prediction 331 356 - -
Mibi06g1092 411 CDD RRM_RBM24_RBM38_like 168 243 - -
Mibi06g1092 411 MobiDBLite consensus disorder prediction 246 277 - -
Mibi06g1092 411 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 72 138 IPR000504 GO:0003723
Mibi06g1092 411 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 170 236 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi06g1092 Mibi-ChrMibi06 30772750 30773985 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi06g1092 160 367 C2H2 Transcription Factor Family AT2G19380 30.516 2.94e-17 82.0