Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi06g1024 ATGCTGCTTTCTCACGTGTCGCATTCAGTTATCATGGCGCCTAGGGAGAAACCGACCGCCGTGAAATCCGCCGCACACGGCGGCGGTCTGAAGGAGGTGCATTTTAGGGGCGTACGGAAGAGGCCCTGGGGAAGATACGCCGCTGAAATCAGAGATCCCGGCAAGAAGAGCCGCGTTTGGCTCGGAACTTTCGATACCGCCGAAGAGGCAGCACGTGCCTACGACAAGGCCGCACGTGAATTCCGTGGTGCCAAGGCCAAAACTAACTTCCCTTTCCCTTCCGATAATCTCATCCTCCAAACCAGCCCGGCTCAGAGCAGTACGGTCGAGTCCTCAAGCCAGGATTGTGAACCGGCTCGCAAGAACGATTCCGGTCCGTTTGATCTCAATTTGACCTCCCACGCCGCCGGATCTGTGACCAGCTCGGTCCGATTTCCGTTTCAGCAGCAGTTTCCGGTGAATCAGGCGTTTTACTTGGACGCGGTGTTACGCGCTAGTCAGGCCTTCCATGGAATCGTGTTCGATCAGCGTCGTTCGGGTGGAGTTCAGAGTGATTCTGATTCTTCCACGGTGATCGATCTGAACGTTCGCGATGATGATGAGAAGATTCATCGGAAGGAGTTGGATCTGGATCTCAACGAACTGCCTCCGGAGGAAATGGCTGGTAGTGTGACCGTACGTAACACGATGGTGAAAAAAGGTACTATAGATCAGATCGGGAAGAAAGGAGAGCACGTTGTGAATACATAA 750 0.54 MLLSHVSHSVIMAPREKPTAVKSAAHGGGLKEVHFRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEEAARAYDKAAREFRGAKAKTNFPFPSDNLILQTSPAQSSTVESSSQDCEPARKNDSGPFDLNLTSHAAGSVTSSVRFPFQQQFPVNQAFYLDAVLRASQAFHGIVFDQRRSGGVQSDSDSSTVIDLNVRDDDEKIHRKELDLDLNELPPEEMAGSVTVRNTMVKKGTIDQIGKKGEHVVNT 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi06g1024 249 ProSiteProfiles AP2/ERF domain profile. 34 91 IPR001471 GO:0003700|GO:0006355
Mibi06g1024 249 CDD AP2 34 91 IPR001471 GO:0003700|GO:0006355
Mibi06g1024 249 Pfam AP2 domain 34 83 IPR001471 GO:0003700|GO:0006355
Mibi06g1024 249 Gene3D AP2/ERF domain 33 92 IPR036955 GO:0003700|GO:0006355
Mibi06g1024 249 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 23 176 - -
Mibi06g1024 249 SMART rav1_2 34 97 IPR001471 GO:0003700|GO:0006355
Mibi06g1024 249 PRINTS Ethylene responsive element binding protein signature 35 46 IPR001471 GO:0003700|GO:0006355
Mibi06g1024 249 PRINTS Ethylene responsive element binding protein signature 57 73 IPR001471 GO:0003700|GO:0006355
Mibi06g1024 249 FunFam Ethylene-responsive transcription factor 2 33 92 - -
Mibi06g1024 249 Coils Coil 67 87 - -
Mibi06g1024 249 MobiDBLite consensus disorder prediction 101 124 - -
Mibi06g1024 249 MobiDBLite consensus disorder prediction 101 119 - -
Mibi06g1024 249 SUPERFAMILY DNA-binding domain 34 92 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi06g1024 Mibi-ChrMibi06 29973074 29974295 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi06g1024 12 217 AP2-EREBP Transcription Factor Family AT5G44210 42.035 2.61e-45 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Mibi06g1024 AP2 9.2e-15 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi06g1024 06 29973074 29974295 Mibi06g1024 06 29973074 29974295 ECH
Mibi01g0676 01 6486635 6487231 Mibi06g1024 06 29973074 29974295 ECH