Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi06g1018 ATGGAATGTGAGAGTCAAGAGAGGAACTTGATGCTAGTTTCTTCTGTGGCAGTAAACCCTGATACAGTGCCTGCAGAGAATAATGACTCATATATGGTTCTTACAATGGAAAAAGAAGATTTGCAGCTGGAACATGTGACTCAAAGTAGTCCAAATTCAAGAAATAATGTAGCTACTGCTGAAGATGATAAACATCAAGGGTTAGATGTTGCTAATGAAAGTAATGGATCCCCTTTACAATGTAAAATCTTGGAAGCATGTAATGAACCAAGTTGTGATAGCAAAGCTTACTTATGTGCTGCTAAAGAATCTGGGACAGTCAAGTCATCCAGTGATGCTGAAAAAGATGTGGATATTGACATCCAGCAGAGAGGTTGCTCTGTTGAGGATGCTAACATTGGCACTCAGAATTCTATAGACAAAATAAAGCAATTGGACATGCATTCAGGGGATGAAATGAAGCAAATGACATCAAGATTTACTTCCCCTGATACGAGGACTCTCAGTCTTTCTCCCAGTGCTGAGATTAAAGATATAAATAAAAGGCCAGCAATTATATGCAGCTTTTTTGCTAAAGGATGGTGCATCAGAGGTAGTTCATGTAGGTTTCTTCATATCAAAGATAATGTAAATAATACCGGCCATCAGGCTGAAGGAGATTTGGTTTCTACTAATCTGAAGAGAGAAAAGCAATCAGAGGAAGGTCTGAGAGGTAATGCAGAGACATCAGGAATGCCTGATGCTGCAGTTCCATTGGCTGCTTCATTAGTGAGCTCTTCGTTGCATTCTTCTGAATTTTCTGTGAAAAAGACCACCCAGGACGAACCAGAAGCAAGCCCGAGTCATCATCCACCTCAAGATAAACTAAAGTCTCCTTCACTTTCAAAAGAGGATTTATTACCAATTGGTAGAGACAGTTCTGCATCAAGGGATGGCTTAATTCCAGAAAATAGATATATTTTTAATGCGCCAGACATCTATTTTAGCAGGAATCTTTCTTCTTATCCATCCTATGTGGAGAAATATACTTCCCAAGTTTCAGCTCCATCAAGTTATTCAATGTCTTCGAATTTATCTATTGGTGCAAGTACTTTGGATGCTCAAAAGTTGTTGAAAAGTGGCAAAGAATATCATGCCCCTAGATCAACTTTCTTGGGTTCGGGATGTGGGGAGTTGCCTCTAACTGGTTCATCTAGAGTTTGGCTACACGCCACTGGATATAAAAGAAAAATAACTTCTTATGATTGGGAGCCATCTGTACCTTTCCGACCGTCTTTTTTTATTACTTCAGCCGGTATGTCATCTTCTGAAGATATGTACGACCCATTTCATCCTTGTGTTGAGGTAACCAATATAGGAGATGGATCCCTGAAAGCTTCCATTTTTATTGACGGGCCTCCTGTCCAGGCTTCATCTCAGTTGCAAACCTATGGTGATTGTGCTGTAGCTGGGGACAAGGTGGTAGATATTAACGATGACAAGAGTTCTGTATCTTCTCATCACAGATTTAATGAGAATGAGGTAAACAAGAGCTGTGCTCCTTCAGAAAAAGATGATTTTGCACATGGAATGGAGACAACAGCCAGAACCAATCTAAACTCCCATAATGGTAAAGCAAGCATCGGAGAAAATACCGTTGCTGTTGAAGATAATACAAAAACTGAAGTTGAACAAACAGAGAATGATTCAAGATATCGAGGTGAAGGATCAGAACCAAAAAAGAGAAGAGTAGATAAGGCTCGGAAAAAAAATGAAATTAATTTTGATTTTCAGATGGACTGCAATCTGCGGAATGATTCGAAGGCTCTAAAAGTTTTTCGTACAGCTCTTGTAGATTTAGTGAAAGAGTTGTTAAAACCATCTTGGCAAGAGGGTCATCTCAGCAAGGATGCACATAATACAATAGTTAAAAAATCAGTTGACAAAGTTATTAACACCCTACAACCCCACCAGATTCCAACCACCATAGATGCAGTCAACCACTATGTTTCTTCATCTCGGTTGAAAATCGGAAAGCTTGTTGATGTAAGTGCCATCTCGTCTTTGTAG 2049 0.3943 MECESQERNLMLVSSVAVNPDTVPAENNDSYMVLTMEKEDLQLEHVTQSSPNSRNNVATAEDDKHQGLDVANESNGSPLQCKILEACNEPSCDSKAYLCAAKESGTVKSSSDAEKDVDIDIQQRGCSVEDANIGTQNSIDKIKQLDMHSGDEMKQMTSRFTSPDTRTLSLSPSAEIKDINKRPAIICSFFAKGWCIRGSSCRFLHIKDNVNNTGHQAEGDLVSTNLKREKQSEEGLRGNAETSGMPDAAVPLAASLVSSSLHSSEFSVKKTTQDEPEASPSHHPPQDKLKSPSLSKEDLLPIGRDSSASRDGLIPENRYIFNAPDIYFSRNLSSYPSYVEKYTSQVSAPSSYSMSSNLSIGASTLDAQKLLKSGKEYHAPRSTFLGSGCGELPLTGSSRVWLHATGYKRKITSYDWEPSVPFRPSFFITSAGMSSSEDMYDPFHPCVEVTNIGDGSLKASIFIDGPPVQASSQLQTYGDCAVAGDKVVDINDDKSSVSSHHRFNENEVNKSCAPSEKDDFAHGMETTARTNLNSHNGKASIGENTVAVEDNTKTEVEQTENDSRYRGEGSEPKKRRVDKARKKNEINFDFQMDCNLRNDSKALKVFRTALVDLVKELLKPSWQEGHLSKDAHNTIVKKSVDKVINTLQPHQIPTTIDAVNHYVSSSRLKIGKLVDVSAISSL 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi06g1018 682 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 186 205 IPR000571 GO:0046872
Mibi06g1018 682 SUPERFAMILY CCCH zinc finger 181 205 IPR036855 GO:0046872
Mibi06g1018 682 MobiDBLite consensus disorder prediction 212 245 - -
Mibi06g1018 682 MobiDBLite consensus disorder prediction 268 294 - -
Mibi06g1018 682 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 52 674 - -
Mibi06g1018 682 MobiDBLite consensus disorder prediction 496 516 - -
Mibi06g1018 682 MobiDBLite consensus disorder prediction 529 552 - -
Mibi06g1018 682 MobiDBLite consensus disorder prediction 529 580 - -
Mibi06g1018 682 Gene3D - 177 293 - -
Mibi06g1018 682 SMART c3hfinal6 181 207 IPR000571 GO:0046872
Mibi06g1018 682 MobiDBLite consensus disorder prediction 553 575 - -
Mibi06g1018 682 MobiDBLite consensus disorder prediction 265 308 - -
Mibi06g1018 682 MobiDBLite consensus disorder prediction 222 236 - -
Mibi06g1018 682 ProSiteProfiles Zinc finger C3H1-type profile. 181 208 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi06g1018 Mibi-ChrMibi06 29913265 29915561 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Mibi06g1018 zf-CCCH 6.1e-06 CL0537
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi06g1018 06 29913265 29915561 Mibi06g1018 06 29913265 29915561 ECH