Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mibi06g1015 | ATGCCAGCACAGAAGCGCTTGTTCGAGGAACTAGAAGAAGAGGACGCTTTACACGGCGAGATGAACCACCATGAGAAGCCAGAAGATGGATTAGAATCCGATCGGAGCCCTTCCGAGAACAACGGCGACAAGGATGAGTTTGTTGTTATAAAACTGTCAGATGTACGCAAGGAAGTTCAGTGTCCTATATGCCTAGGCATCATTCGGAAAACAAGAACCGTCATGGAATGCTTGCACCGCTTTTGCAGAGAGTGTATAGACAAATCCATGCGTCTCGGCAACAATGAGTGCCCTACCTGCCGCACACATTGTGCTAGCCGGCGCTCACTGAGAGATGACCCAAACTATGATGCTTTGATTGCTGCTCTTTATCCAGATATAGACAAGTATGAGCAGGAGGAATTTGCTTTGCATGAATATGAAAAAGCCCTCAATCAGCAGATCCAAGAATCTATTTCTCAGACTCTTCAACGCCAATCAGAAGCACTAGGTAAAAAACGCAATCCCAAATCGAGTACAAGGAGGTCACAAGGTAGTTATCGAACTTCACATGTGAGGGGCAGAAGAAATTGTAGGAGTACGGTTGGACTTCAGGGATCTGATGACACCGAGGACATGAATGATGAAGATGGGGCTAAGGGTTCTTCTTCTGGTGATGAATTGATAGAAATCAGGTCAAAAAGATGTAAAAGAGGGGCAGAAGCACAATTTCCTCCGCACTCTGCAACCACCGTTGCAGATGGTGCCAGTGATGAAAATGCTCCTGAGGTGAGCAGAGAATTCTTGAGTCCTTCTAGGGCACTCGCCTGGGGAAAAAATGGTCACCGGAGTCACACCCGAGTCAATGGCAAGAATGCCAGAAATAGTCGCCTTGCTAAATTGATTGATAATCTTCGTAGCTTGGAAGAAAATGTTGACGAGTTGGGTGTCTGCCTCATGCTTGTGCCTTTTGACGAGAAAAGAATGCCGAGTTTGCAGCAGCCATACCTCTGCTGCAGACCTACGTTGTCTGTCAGGCACCTGTGCCAGTATGTTTCCCTTCAAACGGCTGTACAGGCTGATGAGGTTGAGATATGCTTGGTAAAAGAGCAGCAAGCCGACATCATTAGAGCCGGAGGCTCAGTAGATCCATGCAAAGATAATTTGCAAGTGTTGAGAGAGCAGGAAACTTTGGCTGAACTTAAACCTGATAATTTTAGCTGTGGCCATCTGCTTATGGCATATAAGAGGAGGCTGTTGAACTCAACTGCGGCTAGCTTGAGGTGA | 1266 | 0.4668 | MPAQKRLFEELEEEDALHGEMNHHEKPEDGLESDRSPSENNGDKDEFVVIKLSDVRKEVQCPICLGIIRKTRTVMECLHRFCRECIDKSMRLGNNECPTCRTHCASRRSLRDDPNYDALIAALYPDIDKYEQEEFALHEYEKALNQQIQESISQTLQRQSEALGKKRNPKSSTRRSQGSYRTSHVRGRRNCRSTVGLQGSDDTEDMNDEDGAKGSSSGDELIEIRSKRCKRGAEAQFPPHSATTVADGASDENAPEVSREFLSPSRALAWGKNGHRSHTRVNGKNARNSRLAKLIDNLRSLEENVDELGVCLMLVPFDEKRMPSLQQPYLCCRPTLSVRHLCQYVSLQTAVQADEVEICLVKEQQADIIRAGGSVDPCKDNLQVLREQETLAELKPDNFSCGHLLMAYKRRLLNSTAASLR | 421 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mibi06g1015 | 421 | Pfam | Zinc finger, C3HC4 type (RING finger) | 60 | 100 | - | - | |
| Mibi06g1015 | 421 | ProSitePatterns | Zinc finger RING-type signature. | 77 | 86 | IPR017907 | - | |
| Mibi06g1015 | 421 | MobiDBLite | consensus disorder prediction | 6 | 43 | - | - | |
| Mibi06g1015 | 421 | Coils | Coil | 130 | 150 | - | - | |
| Mibi06g1015 | 421 | PANTHER | OS11G0578200 PROTEIN | 12 | 411 | IPR044592 | - | |
| Mibi06g1015 | 421 | SMART | ring_2 | 61 | 100 | IPR001841 | - | |
| Mibi06g1015 | 421 | SUPERFAMILY | RING/U-box | 50 | 132 | - | - | |
| Mibi06g1015 | 421 | MobiDBLite | consensus disorder prediction | 209 | 234 | - | - | |
| Mibi06g1015 | 421 | MobiDBLite | consensus disorder prediction | 155 | 251 | - | - | |
| Mibi06g1015 | 421 | MobiDBLite | consensus disorder prediction | 1 | 43 | - | - | |
| Mibi06g1015 | 421 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 7 | 131 | IPR013083 | - | |
| Mibi06g1015 | 421 | Coils | Coil | 284 | 304 | - | - | |
| Mibi06g1015 | 421 | CDD | RING-HC_RING1_like | 61 | 101 | - | - | |
| Mibi06g1015 | 421 | ProSiteProfiles | Zinc finger RING-type profile. | 61 | 101 | IPR001841 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Mibi06g1015 | Mibi-ChrMibi06 | 29896189 | 29900061 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Mibi06g1015 | 54 | 124 | C3H Transcription Factor Family | AT3G23060 | 33.784 | 2.97e-06 | 47.4 |