Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi06g1007 ATGCCCGTTTCCTTTCTTTTACTTGCTTCCATGCCTTATTTTCGTTCCTTGTCTCTGTTCCCTGTGCTTTTATGCTCCAATCGCTTAATTTCTGAGTCGCTTTTGATTTCGTTTCTTAGGCTTCAACTGTACGTTCTGGATTATATGAAGCGAAGGGGAATGGATGCGACCGCTGAAATTTTCCAAGCGGAATCGGGTGTTATTGATGCTCCTGGTGTCTCGAGAAGGATTCTTGCACGAATGGTGGCATTTCAAAAGGCCAATAATGGAAGAAGAAATCTCCCTCCTAGAATCCCTCAGCTATTTAAGCAGAGACCTCAGCTTCTTCAAATCGACCCCACCACTGACCAGATGGTGGAGCAATTATCACAGGGAGAAGATGAGAGAGAGTATCTAGGATATCTAGCCGAGAATTCTAATTCAAGCTCACAACATATCAATGTAAAGAGACTGACGTTTGAGGTGGAGGAAAAAACAGTCACATATCGTTTTTATCTTTTGATCTGCAGTGATATTAGCAGCATTGCTGTTCTACTTCATCCTATATTGATAGTGGAATTGGCATTCAGCCAGGAGGCAATATACCCATGGACCCCCTGGGTAGAATGCAAAGAGCTGGAGAAGGTACTCACTTCACTTTTGCAAGCACCCTACTATCAGCAACAGTTTCATGGGCTCGATACACAAAATCAACAAGCACTTTCATGTACACCTAGGAGTCAAACATCCATATTTCATGGAAACTCTTCTATTTGCAACGGCCAAGATCCAAGGCTTCAAACTGATTTATGTAAAGATAGGCAGGATTATATGGATGAAGCAGATGGTAGTGTTGACAGAAACATTGTGCCTTTGTCTGATGAGAATGAACATGCTGATCAAAGAACTGGACCCTCCAGGATTATGAAACTTATTTTTGCGACAAGTGATATGAGGAAAGGTTTTTCATTTGAAGAGGTTGGGTGTCTTCACTCAAGCAAGAGCAAAGTTTTGTCCTGCCATTTTTCATCTGACGGGAAGGTTCTAGCAAGTGCTGGGCATGAGAAGAAGGTTTTCGTTTGGAATATGGAAACACTTGATTGTGTTAGTACTTCAGATGCACATTCACTTCTCATTACAGATGTTCGGTTCAGACCAGGCTCAACCATATTTGCAACATCTTCTGCTGATAAAACCGTAAAAATATGGGATGCAGCCAAAGTAAGCTGTTACTTATCACTTTTAATGTCATTGGACTTCCACCCAAGAAAGGTGGACCTTCTTTGTTCTTGCGATAGCAATGGCATAGTGAGATTGTGGAATGTCAACCAAGGCGTTTGTGTGCGTATAAACAAGGGAGGCAGTAAACAAGTCAGATTCCAGCCTCGAACTGCCAACTTTTTGGCTACAGCTGCAGGAAATATTATTAATGTAATTGATATCGTGGACGACAAACTTATATACAAGCTGAAGGGACATGTTAAAGATGTTATTTCCATTTGTTGGGACGTAACAGGAAACTATCTTGCTTCTGTAAGTGAAGATAGTGCACGTTTGTGGTCCGTTACGTCTGATGGAAAATGCATACAAGTATTGCTTTCAAATAGAAACAAGTTTCAATCGTGCATATTTCATCCTGTATATTGTAACCTCTTAATCATTGGCTGCGATCAGTCCCTGGAGTTTTGGATTCCAACCGAGGGCTGTAAATTATGGACTCATCCTGCTCACAAGGAAGTAATCGCTGGACTAGGAGCTTCACCAGAAAATCAAATGATTGCTTCAGCTAGCCATGATCATACCGTGAAACTTTGGAAATAG 1800 0.4144 MPVSFLLLASMPYFRSLSLFPVLLCSNRLISESLLISFLRLQLYVLDYMKRRGMDATAEIFQAESGVIDAPGVSRRILARMVAFQKANNGRRNLPPRIPQLFKQRPQLLQIDPTTDQMVEQLSQGEDEREYLGYLAENSNSSSQHINVKRLTFEVEEKTVTYRFYLLICSDISSIAVLLHPILIVELAFSQEAIYPWTPWVECKELEKVLTSLLQAPYYQQQFHGLDTQNQQALSCTPRSQTSIFHGNSSICNGQDPRLQTDLCKDRQDYMDEADGSVDRNIVPLSDENEHADQRTGPSRIMKLIFATSDMRKGFSFEEVGCLHSSKSKVLSCHFSSDGKVLASAGHEKKVFVWNMETLDCVSTSDAHSLLITDVRFRPGSTIFATSSADKTVKIWDAAKVSCYLSLLMSLDFHPRKVDLLCSCDSNGIVRLWNVNQGVCVRINKGGSKQVRFQPRTANFLATAAGNIINVIDIVDDKLIYKLKGHVKDVISICWDVTGNYLASVSEDSARLWSVTSDGKCIQVLLSNRNKFQSCIFHPVYCNLLIIGCDQSLEFWIPTEGCKLWTHPAHKEVIAGLGASPENQMIASASHDHTVKLWK 599
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi06g1007 599 ProSiteProfiles Trp-Asp (WD) repeats profile. 567 599 IPR001680 GO:0005515
Mibi06g1007 599 Pfam WD domain, G-beta repeat 563 599 IPR001680 GO:0005515
Mibi06g1007 599 Pfam WD domain, G-beta repeat 324 355 IPR001680 GO:0005515
Mibi06g1007 599 Pfam WD domain, G-beta repeat 360 397 IPR001680 GO:0005515
Mibi06g1007 599 Pfam WD domain, G-beta repeat 479 513 IPR001680 GO:0005515
Mibi06g1007 599 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 365 397 - -
Mibi06g1007 599 CDD WD40 319 599 - -
Mibi06g1007 599 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 100 599 IPR044716 GO:0003714
Mibi06g1007 599 Gene3D - 407 599 IPR015943 GO:0005515
Mibi06g1007 599 ProSiteProfiles LIS1 homology (LisH) motif profile. 41 69 IPR006594 GO:0005515
Mibi06g1007 599 PRINTS G protein beta WD-40 repeat signature 342 356 IPR020472 -
Mibi06g1007 599 PRINTS G protein beta WD-40 repeat signature 384 398 IPR020472 -
Mibi06g1007 599 PRINTS G protein beta WD-40 repeat signature 586 599 IPR020472 -
Mibi06g1007 599 SUPERFAMILY WD40 repeat-like 316 599 IPR036322 GO:0005515
Mibi06g1007 599 ProSiteProfiles Trp-Asp (WD) repeats profile. 323 364 IPR001680 GO:0005515
Mibi06g1007 599 Gene3D - 304 406 IPR015943 GO:0005515
Mibi06g1007 599 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 567 599 - -
Mibi06g1007 599 ProSiteProfiles Trp-Asp (WD) repeats profile. 365 397 IPR001680 GO:0005515
Mibi06g1007 599 SMART WD40_4 398 434 IPR001680 GO:0005515
Mibi06g1007 599 SMART WD40_4 560 599 IPR001680 GO:0005515
Mibi06g1007 599 SMART WD40_4 518 557 IPR001680 GO:0005515
Mibi06g1007 599 SMART WD40_4 476 514 IPR001680 GO:0005515
Mibi06g1007 599 SMART WD40_4 358 397 IPR001680 GO:0005515
Mibi06g1007 599 SMART WD40_4 437 473 IPR001680 GO:0005515
Mibi06g1007 599 SMART WD40_4 316 355 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi06g1007 Mibi-ChrMibi06 29788039 29795024 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi06g1007 247 515 U-box Gene Family AT2G33340 22.887 6.35e-13 69.3