Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi06g0970 ATGTCTGACGCTGAAAATCAATTCTCTTCCAAAAATGGCGATCGTCCAAGTTCAAGGTCTGACAGGAGCTCCCGCGACAAGCCCCAATTTCACGGATCTGATCACGAGAGGCGCAGGGTGAGAAAGCGAGATGGAGAGATGAAAACTGATCATGAATACCATCATAAGGACTTTAAAAATGGAGGCTTTAGAAGAAAAAGCAATTATGACAGTTACAATCGTCATCAGAACTCTGATTATGACAGGCATCGACGTCATGTTCGAGATGGAGAAATGAGGGACAGATATGGAAGACGATCAAGTTACAGATCGAAGCGGGAATCTAGATCTCGCTCCAGGTCTCCTCCTCAATCAGAAAGCAAAAGGATCAGTGGTTTTGACATGGCACCACCATCTGCTGCTGGATTACCTGCTGGTGCGGTTAATAGTGCAGGGCAAATGGTGGGGATCACTCATCCAGGAACTCTGCAGAACGTGCCACCATTTGGGACGTCACAGATTGGAGCTCTTTCCTTAATGTCAGTTCAACCTATGATGCAGCAGGCTACAAGGCATGCACGGCGAGTTTATGTTGGTGGGCTTCCTCCTTTTACTAACGAGCAGGCGGTTGCAGCATTCTTCAGTCATGTTATGGTAGCTATTGGAGGGAATTCTGCTGGTGCAGGTGATTCTGTTGTCAATGTATACATTAATCATGAGAAAAAATTTGCCTTTGTGGAGATGAGAACTGTTGAAGAAGCTAGCAATGCAATGGCATTAGATGGAATCGTATTTGAGGGAGTTGCTGTGCGGGTTCGTAGGCCTACAGACTATAATCCTTCTGTAGCTGCTGCTCTAGGTCCTAGCCATCCCAGTCCAAACCTTAACTTATCTGCTGTTGGGCTTGTTGCTGGTGCAATTGGCGGAGCTGATGGACCTGATCGCATCTTTGTTGGTGGGCTACCATACTATTTTACTGAAGAACAAATAAAAGAATTGCTCCAATCTTTTGGGCCTCTCAAAGCATTTGATCTAGTTAGAGATAAAGACACTGGAAATTCTAAAGGATATGGTTTCTGCTTCTATCAGGATCCAGCTGTAACGGACATTGCTTGTGCCTCTCTGAATGGCCTTAAAATGGGTGACAAAACACTGACTGTCCGGCGTGCCACAGTCTGTGCACAATCTAAAACAGAACAGGAGCATATCTTTGCACAGGCACAACAGCATATTGCTATTCAGAAAATAGCCATGGAAGCAGGCGGGCTAAATATTTCTGGATTGGAAGGAGCGGCATTAACCAAGCTTAATGAAAATGCCACCAAAGTTTTATGCTTAACTGAGGCCGTTACTGCTGATCAACTACAGGATGATGAAGAGTATGGAGAAATATTGGAAGATATGCGGGATGAATGCAGCAAATTTGGGACTTTGATAAATGTTGTTATCCCGCGTCCAAATGGCACAGGCGATGAGGCTTCCCCGGGTGTTGGAAAGGTGTTCTTGGAATATTCTGATACTAGTGGAAGTTTGGCTGCGAGAAATGCGCTAAATGGGAGGAAATTTGGAGGCAGTGTTGTGAGCGCCTTCTATTATCCCGAAGAAAAATATCATAGCATGGAGTATGATGAATGA 1614 0.4492 MSDAENQFSSKNGDRPSSRSDRSSRDKPQFHGSDHERRRVRKRDGEMKTDHEYHHKDFKNGGFRRKSNYDSYNRHQNSDYDRHRRHVRDGEMRDRYGRRSSYRSKRESRSRSRSPPQSESKRISGFDMAPPSAAGLPAGAVNSAGQMVGITHPGTLQNVPPFGTSQIGALSLMSVQPMMQQATRHARRVYVGGLPPFTNEQAVAAFFSHVMVAIGGNSAGAGDSVVNVYINHEKKFAFVEMRTVEEASNAMALDGIVFEGVAVRVRRPTDYNPSVAAALGPSHPSPNLNLSAVGLVAGAIGGADGPDRIFVGGLPYYFTEEQIKELLQSFGPLKAFDLVRDKDTGNSKGYGFCFYQDPAVTDIACASLNGLKMGDKTLTVRRATVCAQSKTEQEHIFAQAQQHIAIQKIAMEAGGLNISGLEGAALTKLNENATKVLCLTEAVTADQLQDDEEYGEILEDMRDECSKFGTLINVVIPRPNGTGDEASPGVGKVFLEYSDTSGSLAARNALNGRKFGGSVVSAFYYPEEKYHSMEYDE 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi06g0970 537 MobiDBLite consensus disorder prediction 1 131 - -
Mibi06g0970 537 TIGRFAM U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor 18 535 IPR006529 GO:0003723|GO:0005634|GO:0006397
Mibi06g0970 537 FunFam U2 snRNP auxiliary factor large subunit 182 283 - -
Mibi06g0970 537 Gene3D - 182 282 IPR012677 -
Mibi06g0970 537 SUPERFAMILY RNA-binding domain, RBD 308 528 IPR035979 GO:0003676
Mibi06g0970 537 MobiDBLite consensus disorder prediction 15 116 - -
Mibi06g0970 537 FunFam U2 snRNP auxiliary factor large subunit 284 396 - -
Mibi06g0970 537 Gene3D - 430 536 IPR012677 -
Mibi06g0970 537 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 307 385 IPR000504 GO:0003723
Mibi06g0970 537 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 309 378 IPR000504 GO:0003723
Mibi06g0970 537 CDD RRM3_U2AF65 434 522 - -
Mibi06g0970 537 FunFam U2 snRNP auxiliary factor large subunit 431 536 - -
Mibi06g0970 537 SUPERFAMILY RNA-binding domain, RBD 76 267 IPR035979 GO:0003676
Mibi06g0970 537 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 187 270 IPR000504 GO:0003723
Mibi06g0970 537 Gene3D - 301 403 IPR012677 -
Mibi06g0970 537 PANTHER RNA-BINDING PROTEIN 12 535 - -
Mibi06g0970 537 SMART rrm1_1 442 523 IPR000504 GO:0003723
Mibi06g0970 537 SMART rrm1_1 308 381 IPR000504 GO:0003723
Mibi06g0970 537 SMART rrm1_1 188 266 IPR000504 GO:0003723
Mibi06g0970 537 CDD RRM2_U2AF65 307 383 - -
Mibi06g0970 537 CDD RRM1_U2AF65 186 268 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi06g0970 Mibi-ChrMibi06 29306446 29314405 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi06g0970 309 516 Eukaryotic Initiation Factors Gene Family AT1G71770 23.923 5.45e-07 50.4