Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi06g0927 ATGGCGGACGCGGGCAACGAGGGGTTTGATTATTCGGAGCTGGTTGACGGAGATGCTGATGCTGATGATAAGTTGTTTATAGATCTTGACACCGTTATGAATGTCCTTGATGAGGATTGTGATCCTTCGGAGAATAGTCTGGAGGTTTTTCCGTTAAAAGATGTCTCACCTGGTGAATCCAGCAACCATGATAATTTTCAGCTTCAAAGTGGAAATTCTATGCTTTGCTACGATCATGAAAATCAAGGACCTCTTTCACGGACTTGCCCTTCCTCTCACGCTGTTCCTGACGGCTTTCAGCAGTTTGATCCTCTAGATGGAAGTAACAAAATTTGCTACACAACAAGGGAAGTGACTTTGGGATGTGAGATGCCAGCCCAATCTTCGGAACTTAGTGTCCCTGAGCCACATTTGAACAATATATCAGTTTGTGTGGATAATTTGAATTTGAATCCTCTCTGGAAGGAAAAAAGTGTGAGCCAGTTCAACCATGTGGGAGACGATGTTAAATCTGAATATGCTTCATGCAGCCCTATGATTGAGAACGGTGATGTAAGTTTTGAACAATATCGAGCTTTTGATGAGGATATGTGTGAAGGGGTTTCTGGGCAACATGAAACTGACTCATGTACATCTTATGAAACATCATTCATGGATGCTAATGGAGGTTCACATATTGCAAAATCGACCAATTCTACTATTTGCCAAGGCTCCAATGCTCTTAGTGATTCTCATTACTACTTACCATCCTTGCATGGTTATAAGGGTACAGATGACAAATTTCTAGCTTCTGACTTGTCTCTTGCTCCTTATTTGCCGAATGCTTTTGGCTCTCAATTTTGGCAAACTCAAGGAGTACTTGACGCTGTGAAAGGTGAAAATGTGGAATATGTGGCTGATGCCTCACATGTGAGTAGCAACATGCATTCCAGTTCTACTGGTGGGATTCCTTTTCAAGATGATCAATTTATACCATCAGATAATGAATTTTCTTCATTTTTTCATGGTAATGCTTCATACTTTCCATGTGAAGATGAAATAGTTTGTTTTAAAGGTGAAAGAGATGAACCGATTGCCCCTTACCAGAACTCTCTGTATGAAGATTACTCGGAGTTTAATGGAGGCCAAGAAATGAATCAATTAAATGGAGGCCAAGAGATGAATCGGTTTAATAGTGCTCTAGCTTCCTTGGGAAGTCATATATTATCCAACATTTATCAAGAGGTGATTGATGGTACAAGCTTCAAATTTCCAAGAGAGACAGCTAATTTGAATAGACAAGGCTTAGACAAATGTTTGCCGTATGTCCAAGCATCAATTAGCACTGAGAAGCAGTTTGGTTATGTTAAAAATGAAGGGGAGGGGGAAATGATTCAAGGCAGGAATTTTGATTACCAAATTTCAAAATCTGACCCTGAACTGGTTCACAGAAGTTTGTTAGAGAAATCCCAAGTTGAGGATGATGACTCTGACGTCTGTGTGATTGAAAGTATCAGTCATCCTGCACCGATAAATGGATCGGCAGTCCATCAGAATTCTCATAAGATATCACAGTATGCTGCGTATGGTGATTCACAACCTTACATGTCACGAAGCACAAGGCTGAAGGCCCGTAATGAGCAAGATATACTTCGAGTTGCGCTACAAGATTTATCTCAGCCAAAGTCAGAAGTTATGCCTCCAGATGGATCGATGGCTGTTCCTCTATTAAGACATCAGAGAATTGCTTTGTCATGGATGGTTCAAAAGGAAACATCAAGTTTACACTGCTCAGGGGGAATCCTTGCTGACGATCAGGGACTTGGAAAAACAGTGTCGACTATTGCTTTGATACTGAAGGAAAGGCCTCCAACACTAACAGCCTGCCACAATGCACAAAAGGGTGAATTAGAAACTTTTAATCTGGATGTCGATGGTGATGTTCTTGTTGAGGGTGGAGTGAAGGAAGACAAGCCTTGTGTAAGTCCAAGTGAAAACAAGAACTTGTTGACACAAACAAAGGGAAGGCCATCCGCAGGAACACTTATTGTTTGTCCCACTAGTGTCCTACGGCAATGGGCTGACGAGCTGCATAATAAGGTAACTAGCAAAGCAAATCTCTCTGTGCTAGTGTACCATGGAAGCAATCGAACCAAAGATCCACATATGCTGGCCAAGTATGATGTTGTTCTGACAACTTATTCAATTGTCAGCATGGAGGTACCTAAGCAGTCTCTGGTTGACAAAAAAGATGAAGAGAAAGGAAATTCTGAAGTTGATGCTGATCTACCGTCTAGTAAGAAAAGGAAAAACCCTCCTAGTAAAAGCAGCAAGAAGAAATTAGACTCTGCTTTGCTTGAGGCTTCTGCTCGCCCTTTAGCGAAGGTGGCATGGTATAGAGTTGTCTTGGATGAGGCCCAGAGTATAAAGAATCACAGAACTCAAGTTGCAAGGGCCTGCTGGGGTCTTCGTGCGAAACGAAGATGGTGCTTGTCTGGGACTCCTATCCAGAATTCTATTGATGATCTTTATAGTTATTTTAGATTTCTCAGATATGACCCTTATGCTGTATATACTGAATTCTGTTCTCGTATCAAGATTCCAATAAACAGAAATCCAAACCAAGGGTACAGAAAGCTACAAGCTGTCTTGAAGACAATGATGTTACGCAGGACAAAAGGCACACTTCTTGATGGGGAGCCTGTCATTAAACTGCCACCTAAATATGTGAACCTGAAAAAAGTGGATTTTTCAAGAGAGGAGCGTGATTTCTATTCCAGACTGGAAGCCGATTCTCGTGCACAGTTTCAGGAATATGCTAAAGCTGGAACTGTCAAGGAAAATTATGTCAACATTCTATTGATGCTTTTACGCCTTCGACAAGCTTGTGATCATCCTTTGCTTGTTAAGCGCTACAATTCTAACTCTTTGTGGGTATCTTCAGTTGAGATGGCAAATAAGCTTCCGAGAGAAAAACGAACATCACTTCTGGAATGTTTGGATGCCTCCTTGGCTCTTTGTGGCATCTGTAATGATTCTCCTGAAGATGCAGTTGTTTCAGCTTGTGGTCATGTTTTTTGTAACCAGTGTATTTCTGAACATCTCACTGGTGATGACAATCAGTGCCCTACTACAAGTTGCAAAGCTCAATTGAGTGTGTCTTCAGTGTTTTCCAGAGGCACATTGAGATGTTCTCTTTCTGATCAGGCTAGTAATAATTTGGTTGGTTGCTCTGGCTCTGAAGTGGAGGGTTATGAGCCTTGTTCTCAGAGTCAGCCATCTGATTCTTCGAAAATTAAGGCTGCTCTTGAGGTATTGAGCTCATTGTGTAAGCCACAGGTTAATGCGTCAAGAAATATTTCAATGCAGAGTAATTCTGATGAACATAGTGACTGCCATGGGATTTCCTCTGATGCCAACAAGGTGAAATCCTTCGAGGATTTTCCTGAGAGTCAAAAAGTGTCAGATGGAAGCACTAAGGATTCATTTGTTAGAGAGAAAGCTATTGTATTCTCTCAGTGGACAAGGATGTTGGATTTACTGGAAGCATGTCTTAAGAATTCTTCAATTCAGTATAGGAGGCTTGACGGCACAATGTCAGTTGTTGCTAGGGATAAAGCTGTTAAAGATTTTAATACTCTCCCAGAGGTGACAGTTATGATTATGTCTTTGAAAGCTGCCAGTCTCGGCCTCAACATGGTAGCTGCCTGCCATGTACTTATGCTTGATCTATGGTGGAATCCGACAACAGAAGATCAAGCAATTGACAGAGCGCATCGAATTGGGCAGACTCGCCCTGTAACTGTTTTACGGTTGACTGTGAGAGATACCGTTGAAGATCGTATTTTAGCTCTACAGCAAAAGAAGCGGAAGATGGTTGCATCTGCGTTTGGAGAAGATGAAACTGGCGGTCGTCAAAGTCGCCTCACAGTGGATGATTTAAAATACTTGTTCATGATGTGA 3942 0.4165 MADAGNEGFDYSELVDGDADADDKLFIDLDTVMNVLDEDCDPSENSLEVFPLKDVSPGESSNHDNFQLQSGNSMLCYDHENQGPLSRTCPSSHAVPDGFQQFDPLDGSNKICYTTREVTLGCEMPAQSSELSVPEPHLNNISVCVDNLNLNPLWKEKSVSQFNHVGDDVKSEYASCSPMIENGDVSFEQYRAFDEDMCEGVSGQHETDSCTSYETSFMDANGGSHIAKSTNSTICQGSNALSDSHYYLPSLHGYKGTDDKFLASDLSLAPYLPNAFGSQFWQTQGVLDAVKGENVEYVADASHVSSNMHSSSTGGIPFQDDQFIPSDNEFSSFFHGNASYFPCEDEIVCFKGERDEPIAPYQNSLYEDYSEFNGGQEMNQLNGGQEMNRFNSALASLGSHILSNIYQEVIDGTSFKFPRETANLNRQGLDKCLPYVQASISTEKQFGYVKNEGEGEMIQGRNFDYQISKSDPELVHRSLLEKSQVEDDDSDVCVIESISHPAPINGSAVHQNSHKISQYAAYGDSQPYMSRSTRLKARNEQDILRVALQDLSQPKSEVMPPDGSMAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTVSTIALILKERPPTLTACHNAQKGELETFNLDVDGDVLVEGGVKEDKPCVSPSENKNLLTQTKGRPSAGTLIVCPTSVLRQWADELHNKVTSKANLSVLVYHGSNRTKDPHMLAKYDVVLTTYSIVSMEVPKQSLVDKKDEEKGNSEVDADLPSSKKRKNPPSKSSKKKLDSALLEASARPLAKVAWYRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNSIDDLYSYFRFLRYDPYAVYTEFCSRIKIPINRNPNQGYRKLQAVLKTMMLRRTKGTLLDGEPVIKLPPKYVNLKKVDFSREERDFYSRLEADSRAQFQEYAKAGTVKENYVNILLMLLRLRQACDHPLLVKRYNSNSLWVSSVEMANKLPREKRTSLLECLDASLALCGICNDSPEDAVVSACGHVFCNQCISEHLTGDDNQCPTTSCKAQLSVSSVFSRGTLRCSLSDQASNNLVGCSGSEVEGYEPCSQSQPSDSSKIKAALEVLSSLCKPQVNASRNISMQSNSDEHSDCHGISSDANKVKSFEDFPESQKVSDGSTKDSFVREKAIVFSQWTRMLDLLEACLKNSSIQYRRLDGTMSVVARDKAVKDFNTLPEVTVMIMSLKAASLGLNMVAACHVLMLDLWWNPTTEDQAIDRAHRIGQTRPVTVLRLTVRDTVEDRILALQQKKRKMVASAFGEDETGGRQSRLTVDDLKYLFMM 1313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi06g0927 1313 Pfam SNF2-related domain 584 961 IPR000330 GO:0005524|GO:0140658
Mibi06g0927 1313 Gene3D - 899 1312 IPR027417 -
Mibi06g0927 1313 MobiDBLite consensus disorder prediction 739 762 - -
Mibi06g0927 1313 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 767 896 - -
Mibi06g0927 1313 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 893 1312 IPR027417 -
Mibi06g0927 1313 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 656 743 - -
Mibi06g0927 1313 Pfam Zinc finger, C3HC4 type (RING finger) 1000 1037 - -
Mibi06g0927 1313 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 994 1051 IPR013083 -
Mibi06g0927 1313 Pfam Helicase conserved C-terminal domain 1157 1255 IPR001650 -
Mibi06g0927 1313 MobiDBLite consensus disorder prediction 739 776 - -
Mibi06g0927 1313 SMART ring_2 1000 1038 IPR001841 -
Mibi06g0927 1313 Gene3D - 543 642 IPR038718 -
Mibi06g0927 1313 ProSiteProfiles Zinc finger RING-type profile. 1000 1036 IPR001841 -
Mibi06g0927 1313 SUPERFAMILY RING/U-box 997 1042 - -
Mibi06g0927 1313 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1151 1308 IPR001650 -
Mibi06g0927 1313 CDD SF2_C_SNF 1158 1265 - -
Mibi06g0927 1313 SMART ultradead3 565 861 IPR014001 -
Mibi06g0927 1313 Gene3D - 769 885 IPR038718 -
Mibi06g0927 1313 Gene3D - 657 746 IPR038718 -
Mibi06g0927 1313 CDD DEXDc_SHPRH-like 569 884 - -
Mibi06g0927 1313 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 584 846 IPR014001 -
Mibi06g0927 1313 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 553 884 IPR027417 -
Mibi06g0927 1313 ProSitePatterns Zinc finger RING-type signature. 1015 1024 IPR017907 -
Mibi06g0927 1313 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 494 1312 - -
Mibi06g0927 1313 SMART helicmild6 1172 1255 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi06g0927 Mibi-ChrMibi06 28388337 28396975 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi06g0927 430 1312 RAD5 or RAD16-like Gene Family AT1G61140 58.523 0.0 974
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Mibi06g0927 SNF2_N 3.8e-71 CL0023
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi06g0927 06 28388337 28396975 Mibi06g0927 06 28388337 28396975 CCT