Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi06g0878 ATGGATCCATCTCATCCCTCCAATGAAGAAGCTAACTCAGAAAACACCAACAACAACAACACTAACTCATTAGCCGACGACCATGTCAACTTCTTTGATGAGGACCATGCTGTCACCTTTGAAGAAGCTTTAGGTCAAGACTTGGTGGGAATTATGGATATGCTAACTTCATTTTCTGAAATCGACAATGGCTTTGAGCTACAAAACCCTGGCGTCCGTGCTAATAATAATAATGATATAGCTGCTTTCATGGAGGAGTATCTTAATAACATCCCAAATGTTGACCTAGAAGATGGTGGTCGTCTTCGTGATATTCGCAGAGCTGTGACTGATGCTCTAACGGAGGTGATGGTGAACAACAACAACCAAGTAGAAGAAGAAGAAGAAGAAGATCCGAGAGCCATTGTTAATAATAATCGTCGTGCAACTAGGCCAGCAAGTGAATCAGCCATTCAAGGATTGGAGAAGGTGACTGTAGTAATTGGAGAGAAAGATGAAAAGGGTAAGTGTAATGAATGTTCTATTTGCTTTGAAAATTTTTCTAACGACCCTGAAGCTTCTCGTATGCCTTGCTCGCATTTGTTTCACACAAAGTGCATCTATGGTTGGCTCCATACTTGCAACACTTGTCCTCTCTGCCGATTCGAATTGCCTACAGGTGATGCAAATTGA 672 0.4167 MDPSHPSNEEANSENTNNNNTNSLADDHVNFFDEDHAVTFEEALGQDLVGIMDMLTSFSEIDNGFELQNPGVRANNNNDIAAFMEEYLNNIPNVDLEDGGRLRDIRRAVTDALTEVMVNNNNQVEEEEEEDPRAIVNNNRRATRPASESAIQGLEKVTVVIGEKDEKGKCNECSICFENFSNDPEASRMPCSHLFHTKCIYGWLHTCNTCPLCRFELPTGDAN 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi06g0878 223 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 131 220 IPR013083 -
Mibi06g0878 223 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 71 218 - -
Mibi06g0878 223 CDD RING-H2_PA-TM-RING 172 214 - -
Mibi06g0878 223 Pfam Ring finger domain 171 214 IPR001841 -
Mibi06g0878 223 SMART ring_2 173 213 IPR001841 -
Mibi06g0878 223 SUPERFAMILY RING/U-box 172 218 - -
Mibi06g0878 223 Coils Coil 110 130 - -
Mibi06g0878 223 ProSiteProfiles Zinc finger RING-type profile. 173 214 IPR001841 -
Mibi06g0878 223 MobiDBLite consensus disorder prediction 1 26 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi06g0878 Mibi-ChrMibi06 27804289 27804960 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi06g0878 137 223 C3H Transcription Factor Family AT5G01980 44.828 7.05e-18 79.7