Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi06g0863 ATGGCGTCTCACCTTCCTGACCACTTCAAGTGTCCGATTTCCCTCGAAATAATGTCCGACCCTGTCATCATCCCCTCCGGTCACACCTTTGACCGTTCCTCCATCCAACGTTGGCTCGATGCCGGCCACCGTGTTTGCCCAATTACCAAATTACCCCTCCCCGATTACCCTTCCCTCATCCCTAATCACGCTCTTAGAAGCTTGATTTCCAACTATGCCCTCATTTCCCCTCTACAGCACCAGCTCCCTCCCCAACCCGAAACCCTAATTTCCCTCCTCACCTCTCAATCTTCCCCCTTAAAATCCAAAATTGAATTGCTGAGTCAACTCGTTCGGATTTCCCAGAAAGACTCGGTTTTTCGCCGTCGGTTGACTGAGTCAGGGGTTGTGTCTGCGGTGCTTAACTGCGTTGACTCTGGTGATAACGGTCTTCAGGAAAAGGCCCTTTCTTTGCTTTTGAATCTAAGCCTTGATGATGATAACAAGGTGGGTTTGGTGGCTGAAGGTGTGATACGTCGTGTTGTGGATGTTTTGCTTGGTGGGTCGTCGAATTGTAAGGCGATTGCTGCGACTATGGTGACAAGTTTGGCGGTTGTGGAGGTTAATAAGATCGTAATTGGTGAATACCCATGTGCGATTGAAGCTCTGGTTTCGCTTCTGAGGAATGGTAAAGGGAGGGAGAAGAAGGAGGCTGCTACGGCTCTTTATGCGTTATGTTCGTTTGTTGATAATAGAAGGAGGGCTGTGGAATGTGGGGTGGTTCCTGTTTTGCTTGGGAGTGTTGATTCTGGGCTTGAGAGGGGTGTTGAAGTTTTGGGTGTTTTGGCTAAGTGTAAGGAAGGGAGGGAACAGATGAAGAGCTATCATGGATGTGTTAAGATTTTGGCTCGGGTTTTGAGGAATGGAAGCTCCAGGGGGATTCAATATGCACTGTTGGCATTGAATTCTCTTTGTTGTAGTAGTGAGAAAATGAGATTGGAGGCTGTGAAAGAAGGGGTTTTGGAGATTGGTCTTCAGTTGCTGGATGATGATAGTGAGAAGGTGAGGAGAAACTCGTCTAATTTGATTCAGGTTCTGCGTGGCAACCAGTGGACAAGTTGA 1101 0.4796 MASHLPDHFKCPISLEIMSDPVIIPSGHTFDRSSIQRWLDAGHRVCPITKLPLPDYPSLIPNHALRSLISNYALISPLQHQLPPQPETLISLLTSQSSPLKSKIELLSQLVRISQKDSVFRRRLTESGVVSAVLNCVDSGDNGLQEKALSLLLNLSLDDDNKVGLVAEGVIRRVVDVLLGGSSNCKAIAATMVTSLAVVEVNKIVIGEYPCAIEALVSLLRNGKGREKKEAATALYALCSFVDNRRRAVECGVVPVLLGSVDSGLERGVEVLGVLAKCKEGREQMKSYHGCVKILARVLRNGSSRGIQYALLALNSLCCSSEKMRLEAVKEGVLEIGLQLLDDDSEKVRRNSSNLIQVLRGNQWTS 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi06g0863 366 Gene3D - 212 362 IPR011989 -
Mibi06g0863 366 FunFam RING-type E3 ubiquitin transferase 4 76 - -
Mibi06g0863 366 Pfam Armadillo-like 87 244 IPR006911 -
Mibi06g0863 366 ProSiteProfiles U-box domain profile. 4 79 IPR003613 GO:0004842|GO:0016567
Mibi06g0863 366 Gene3D - 84 211 IPR011989 -
Mibi06g0863 366 SUPERFAMILY ARM repeat 87 359 IPR016024 -
Mibi06g0863 366 SMART Ubox_2 8 72 IPR003613 GO:0004842|GO:0016567
Mibi06g0863 366 PANTHER U BOX DOMAIN-CONTAINING 5 356 - -
Mibi06g0863 366 SMART arm_5 320 361 IPR000225 GO:0005515
Mibi06g0863 366 SMART arm_5 278 319 IPR000225 GO:0005515
Mibi06g0863 366 SMART arm_5 199 240 IPR000225 GO:0005515
Mibi06g0863 366 SMART arm_5 117 157 IPR000225 GO:0005515
Mibi06g0863 366 SMART arm_5 158 198 IPR000225 GO:0005515
Mibi06g0863 366 CDD RING-Ubox_PUB 9 50 IPR045210 -
Mibi06g0863 366 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 4 76 IPR013083 -
Mibi06g0863 366 Pfam U-box domain 6 72 IPR003613 GO:0004842|GO:0016567
Mibi06g0863 366 SUPERFAMILY RING/U-box 4 73 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi06g0863 Mibi-ChrMibi06 27620931 27622031 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi06g0863 1 361 U-box Gene Family AT4G21350 61.518 1.45e-149 425