Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi06g0767 ATGACTGAACTCGAAGCTTCTCGCTCAGACAAGAAGAAGAAGAAGCACAGAAACAAAGACGAATCATCCACAGACAACAACGTCCAAGACTCCGATTTCTTAATCAAACCACAGAGTTACACTCCCACCATTGACACTTCTCAATGGCCGATTCTCCTCAAAAACTACGATCGCCTCAATGTACGAACCGGTCACTACACTCCAATCCCTTCCGGTTTCTCTCCTCTCAAACGACCTCTCGCCGAATACATCAAGTACGGTATCATGAATCTCGATAAACCAGCAAATCCTTCTTCCCACGAGGTCGTCGCTTGGATTAAAAGAATCCTACGTGTCGAGAAAACCGGTCACAGTGGAACCCTAGATCCTAAGGTTACTGGGAATCTAATTGTTTGCATTGATAGGGCCACGCGCTTGGTGAAATCGCAGCAAGGTGCTGGGAAGGAGTATGTTTGTGTTGCCAGGTTGCATTCTGCGGTGCCTGATGTAGCGAAGGTGGCGCGTGCGCTCGAGACGCTTACTGGGGCGGTGTTTCAGCGGCCGCCGTTGATTTCGGCGGTGAAGAGGCAGCTTAGGATAAGGACTATTTATGAAAGTAAGCTTCTTGAGTATGATGCTGATAAACATTTGGTTGTGTTTTGGATTTCGTGTGAGGCGGGTACGTATGTGAGGACTCTGTGTGTTCATTTGGGTTTGATTCTTGGTGTGGGGGGGCATATGCAGGAGCTTAGGAGGGTGCGTTCGGGTATTTTGGGGGAGAAAGATAATATGGTTTCTATGCATGATGTTTTGGATGCTCAATGGGTTTATGATAATTATAGGGATGAGGCTTATTTGAGGAGGGTTATTATGCCTTTGGAAGTAATATTAACGAGCTATAAGAGGTTAGTTGTTAAGGACTCTGCTGTCAATGCTATTTGTTATGGGGCGAAGCTGATGATTCCTGGGTTGTTGAGGTTTGAGAATGATATTGAGGTAGGGGAGGAAGTGGTGCTGATGACTACTAAAGGTGAGGCGATTGCGTTGGGGATCGCGGAGATGACTACTGCTGTAATGGCTACTTGTGATCATGGTGTCGTAGCTAAGATTAAAAGAGTGGTTATGGATAGAGATACTTATCCGAGGAAATGGGGTCTAGGACCGAGGGCGTCCATGAAGAAGAAGTTGATTTCGGAGGGGAAGCTAGATAAGCGCGGGAAGCCTAATGACAATACTCCTCAGGAGTGGCTGAGGAATGTAGTTTTACCGACTGGTGGGGATTCTATCATTGCCGGTATGCATGCTTCGGCTGAACCAGATGCCGGCAAGAAGGATAAAGTTGAGAGTAAGGAGGATGGGCATGAGCGCAAGAGAAAACTAGTTGAAAGCACTGATGCTGCTCTAGTGCCCACTAAGAAGGCCAAAACTGAAGAAGTTGAAGTAGCTGAGAAGGAGGAATTAGTCAAGATCAAGAAGGTAAAGGAGGATGTAGTGGAGGTTGAAGTTGATAAGAAAGAGAAAAAGAAGAAGAAGAAGAAGGATAAGGATGCAGATGAAGCAGAGGTTGGCTCACCAGATGTGGAGAAGTCAGAGAAGAAGAAAAAAAAACACAAAGAAAAGACAGAGGCTGATGCTTCACCTGATATGGAGAAGTCAGAGAAGAAGAAAAAGAAGAAGGAGAAAGAAGCTGAGAATCATGCTGCTGAGATAAATGGGAAGGCTGATGATGAGGATAAAAGTGAGAAAAAGAAGAAGAAGAAGCATAAGAAGAAAAGTGAAGATGCAGAGGAATAA 1773 0.4535 MTELEASRSDKKKKKHRNKDESSTDNNVQDSDFLIKPQSYTPTIDTSQWPILLKNYDRLNVRTGHYTPIPSGFSPLKRPLAEYIKYGIMNLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHSAVPDVAKVARALETLTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLILGVGGHMQELRRVRSGILGEKDNMVSMHDVLDAQWVYDNYRDEAYLRRVIMPLEVILTSYKRLVVKDSAVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTAVMATCDHGVVAKIKRVVMDRDTYPRKWGLGPRASMKKKLISEGKLDKRGKPNDNTPQEWLRNVVLPTGGDSIIAGMHASAEPDAGKKDKVESKEDGHERKRKLVESTDAALVPTKKAKTEEVEVAEKEELVKIKKVKEDVVEVEVDKKEKKKKKKKDKDADEAEVGSPDVEKSEKKKKKHKEKTEADASPDMEKSEKKKKKKEKEAENHAAEINGKADDEDKSEKKKKKKHKKKSEDAEE 590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi06g0767 590 MobiDBLite consensus disorder prediction 1 33 - -
Mibi06g0767 590 SUPERFAMILY Pseudouridine synthase 46 291 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Mibi06g0767 590 Pfam TruB family pseudouridylate synthase (N terminal domain) 107 223 IPR002501 GO:0006396
Mibi06g0767 590 SMART DKCLD_2 45 103 IPR012960 -
Mibi06g0767 590 PANTHER CENTROMERE/MICROTUBULE BINDING PROTEIN CBF5 9 577 IPR004802 GO:0006396
Mibi06g0767 590 TIGRFAM unchar_dom_2: uncharacterized domain 2 289 365 IPR004521 GO:0003723
Mibi06g0767 590 MobiDBLite consensus disorder prediction 491 590 - -
Mibi06g0767 590 SMART pua_5 294 368 IPR002478 GO:0003723
Mibi06g0767 590 Gene3D Pseudouridine synthase 79 285 - -
Mibi06g0767 590 ProSiteProfiles PUA domain profile. 293 368 - -
Mibi06g0767 590 FunFam H/ACA ribonucleoprotein complex subunit CBF5 79 285 - -
Mibi06g0767 590 Coils Coil 483 503 - -
Mibi06g0767 590 Coils Coil 542 564 - -
Mibi06g0767 590 Pfam DKCLD (NUC011) domain 46 103 IPR012960 -
Mibi06g0767 590 Gene3D PUA domain 46 377 IPR036974 GO:0003723
Mibi06g0767 590 Pfam tRNA pseudouridylate synthase B C-terminal domain 224 290 IPR032819 -
Mibi06g0767 590 MobiDBLite consensus disorder prediction 491 575 - -
Mibi06g0767 590 Pfam PUA domain 294 366 IPR002478 GO:0003723
Mibi06g0767 590 TIGRFAM CBF5: putative rRNA pseudouridine synthase 53 378 IPR004802 GO:0006396
Mibi06g0767 590 MobiDBLite consensus disorder prediction 431 456 - -
Mibi06g0767 590 SUPERFAMILY PUA domain-like 293 374 IPR015947 -
Mibi06g0767 590 CDD PseudoU_synth_hDyskerin 85 267 - -
Mibi06g0767 590 MobiDBLite consensus disorder prediction 1 26 - -
Mibi06g0767 590 MobiDBLite consensus disorder prediction 423 458 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi06g0767 Mibi-ChrMibi06 26277013 26278785 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi06g0767 1 503 NAC Transcription Factor Family AT3G57150 77.426 0.0 729