Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi06g0639 ATGCCAGTTCTTCTTGGTCAGTTTCAGTTTGAAATGTCAGAAGTGGATGAGTACCGTTGCTTTATTGGTGGCCTTGCATGGTCGACATCTGATAGGAAGCTGAAGGATGCATTTGAAAAGTTTGGCAAACTTGTTGAGGCAAAGGTAGTTGTTGACAAATTCTCTGGACGCTCTCGTGGTTTTGGATTTGTTACATTTGATGAAAAGAAAGCTATGGAAGAGGCTATTGAGGCTATGAATGGGATGGATTTAGATGGTCGAACTATCACTGTTGACAAAGCTCAGCCTCAACAAGGATCTGCTAGAGATGATGGAGATCGTTACCGTGAAAGGGGTCGCGATCGTAACCGAGATTATGGGGGTGGTCGAAGCTCCAATGGTGGTGAGTGTTTTAAATGTGGTAAGCCTGGTCATTTCGCCAGGGAGTGCCCTAGTGAAGGAGGAGGAGGGAAGTATGGTGGCAGGGAAAGTAGACATGGTGGCAGGAGTGGTGGTGGTGGTCACTATGGCCCTGATAGGAATGCAGATCGTCATTCTGGTGGGCGTAACAGGGACTCTGGTAGTCATGGAGATTCTGGAAGTGACCGGTACCCTCGTGATCGCGCTGGACCTTATGAACGTCGAGGATCAGGAGGCTTTCGTTCTGGATAG 651 0.4823 MPVLLGQFQFEMSEVDEYRCFIGGLAWSTSDRKLKDAFEKFGKLVEAKVVVDKFSGRSRGFGFVTFDEKKAMEEAIEAMNGMDLDGRTITVDKAQPQQGSARDDGDRYRERGRDRNRDYGGGRSSNGGECFKCGKPGHFARECPSEGGGGKYGGRESRHGGRSGGGGHYGPDRNADRHSGGRNRDSGSHGDSGSDRYPRDRAGPYERRGSGGFRSG 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi06g0639 216 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 21 90 IPR000504 GO:0003723
Mibi06g0639 216 Gene3D - 127 186 - -
Mibi06g0639 216 SMART rrm1_1 19 92 IPR000504 GO:0003723
Mibi06g0639 216 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 18 96 IPR000504 GO:0003723
Mibi06g0639 216 ProSiteProfiles Zinc finger CCHC-type profile. 130 145 IPR001878 GO:0003676|GO:0008270
Mibi06g0639 216 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN RZ1A 12 212 - -
Mibi06g0639 216 SUPERFAMILY Retrovirus zinc finger-like domains 121 151 IPR036875 GO:0003676|GO:0008270
Mibi06g0639 216 MobiDBLite consensus disorder prediction 87 216 - -
Mibi06g0639 216 Pfam Zinc knuckle 129 145 IPR001878 GO:0003676|GO:0008270
Mibi06g0639 216 SUPERFAMILY RNA-binding domain, RBD 5 128 IPR035979 GO:0003676
Mibi06g0639 216 FunFam Glycine-rich RNA-binding protein RZ1A 12 129 - -
Mibi06g0639 216 Gene3D - 8 126 IPR012677 -
Mibi06g0639 216 SMART c2hcfinal6 129 145 IPR001878 GO:0003676|GO:0008270
Mibi06g0639 216 MobiDBLite consensus disorder prediction 99 120 - -
Mibi06g0639 216 MobiDBLite consensus disorder prediction 171 207 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi06g0639 Mibi-ChrMibi06 21923497 21925336 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi06g0639 20 95 Eukaryotic Initiation Factors Gene Family AT4G34110 39.474 3.51e-09 54.3