Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi06g0552 ATGCCACAGATTTCTTTGTCCAACAAGATTTCAGATTCAGGAAATATGTCTCACAGGAAGTTTGAGCACCCAAGACATGGTTCCCTTGGCTTTCTCCCTAGGAAGCGTGCTGCTCGTCATCGTGGGAAGGCAAAGGCTTTCCCAAAGGATGATCCTAGCAAACCTTGCAGCTTGACTGCCTTTATGGGTTACAAGGCTGGGATGACCCACATTGTTAGAGAAGTTGAGAAACCTGGATCAAAGCTTCATAAGAAGGAGACTTGTGAGGCTGTTACCATTGTTGAAACTCCTCCGATGGTGGTTGTTGGGGTTGTTGGATATGTGAAGACACCTCGTGGACTACGCACCTTAAGTACAGTATGGGCTCAGCATCTAAGTGAGGAAGTTAAAAGGCGATTCTACAAGAACTGGTGCAAGTCTAAGAAGAAGGCTTTTACCAAATATTCAAAGAAACACGAAACCGAGGAAGGAAAGAAGGACATTCAAGCACAGCTTGAAAAACTGAAGAAATATGCATCTGTTATCCGTGTTTTGGCCCATACTCAGATACGGAAGTTGAAGGGTCTAAAGCAAAAGAAGGCACACCTGATGGAGATCCAAGTTAATGGCGGGTCTATAGCGCAGAAGGTGGACTTTGCATATGGCTTCTTTGAGAAGCAAATCCCAGTGGAAGCTGTTTTCCAGAAAGATGAGATGATAGACATCATTGGTGTGACAAAGGGTAAAGGTTATGAAGGTGTTGTAACCCGTTGGGGTGTCACTCGTCTTCCCCGCAAGACACACAGGGGTCTAAGAAAGGTTGCTTGTATTGGTGCTTGGCACCCTGCCCGAGTTTCCTTCACAGTTGCCAGGGCTGGACAAAATGGATATCATCACCGTACTGAGTTGAATAAGAAGATTTACAAGGTCGGCAAGGCAGGGGAAGAGTCACACTCTGCCATTACTGATTTTGACAGGACTGAGAAGGACATAACTCCAATGGGTGGATTCCCTCACTATGGTGTGGTAAAGGATGATTTTATAATGATTAGGGGATGCTGTGTGGGACCCAAAAAGCGTGTGCTGACCCTTCGACAGTCATTATTGAAGCAGACTTCTCGTGTGGCCCTTGAAGAGATCAAGCTCAAGTTCATTGACACTTCCTCCAAGTTTGGACATGGACGCTTCCAGACTACTCAGGAGAAACAGAAGTTTTATGGTCGCTTGAAGGCCTGA 1215 0.4584 MPQISLSNKISDSGNMSHRKFEHPRHGSLGFLPRKRAARHRGKAKAFPKDDPSKPCSLTAFMGYKAGMTHIVREVEKPGSKLHKKETCEAVTIVETPPMVVVGVVGYVKTPRGLRTLSTVWAQHLSEEVKRRFYKNWCKSKKKAFTKYSKKHETEEGKKDIQAQLEKLKKYASVIRVLAHTQIRKLKGLKQKKAHLMEIQVNGGSIAQKVDFAYGFFEKQIPVEAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTELNKKIYKVGKAGEESHSAITDFDRTEKDITPMGGFPHYGVVKDDFIMIRGCCVGPKKRVLTLRQSLLKQTSRVALEEIKLKFIDTSSKFGHGRFQTTQEKQKFYGRLKA 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi06g0552 404 ProSitePatterns Ribosomal protein L3 signature. 227 250 IPR019926 -
Mibi06g0552 404 Gene3D Translation factors 59 400 - -
Mibi06g0552 404 MobiDBLite consensus disorder prediction 1 29 - -
Mibi06g0552 404 SUPERFAMILY Translation proteins 19 385 IPR009000 -
Mibi06g0552 404 Gene3D - 98 222 - -
Mibi06g0552 404 FunFam 60S ribosomal protein L3 98 222 - -
Mibi06g0552 404 Pfam Ribosomal protein L3 16 385 IPR000597 GO:0003735|GO:0005840|GO:0006412
Mibi06g0552 404 Gene3D Ribosomal protein L3, domain 3 16 289 IPR044892 -
Mibi06g0552 404 FunFam Ribosomal protein L3 280 404 - -
Mibi06g0552 404 PANTHER 60S RIBOSOMAL PROTEIN L3-RELATED 16 399 IPR045077 GO:0003735|GO:0005840|GO:0006412
Mibi06g0552 404 FunFam 60S ribosomal protein L3 59 168 - -
Mibi06g0552 404 MobiDBLite consensus disorder prediction 15 29 - -
Mibi06g0552 404 FunFam 60S ribosomal protein L3 16 96 - -
Mibi06g0552 404 FunFam 60S ribosomal protein L3 241 289 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi06g0552 Mibi-ChrMibi06 20009900 20014500 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi06g0552 16 401 Cytoplasmic Ribosomal Protein Gene Family AT1G61580 86.010 0.0 698