LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mibi06g0543	ATGTCGTTCCGGAGTATAGTTCGTGATGTGAAAGATAGCATAGGGAGCTTATCTAGACGGAGATTTGATGTGCGGATGACTGGCCATCACAGAGGAAAATCTCATGGTGCTATACATGACCAGCCAGAAGTAATTGATGATAGTTGCTGGGCTAGCTTGCCCCCAGAACTGTTGTATGATATCATTAGAAGGCTAGAAGAGAGTGAAAGTACATGGCCTGCTCGAAAACATGTTGTTGCATGTGCTGCAGTTTGCCGGTCTTGGAGGACCATGTGCAAAGAAATTGTCAAGAGTCCAGAGTTTAGTGGAAAGCTTACGCTCCCTGTGTCCTTGAAGCAGCCAGGATCACGGGACGGAACCATTCAGTGTTTCATCAAAAGAGATAAATCTAACTCATCATATCGCCTTTTCCTTTGCCTGAGCCCTACTTTGCTAGTTGAAAATGGAAAATTCCTGCTTTCTGCAAAGAGGACAAGAAGAACAACTTACACAGAGTATGTCATTTCCATGGATGCCGGCAATATCTCTAGATCGAGTAGCTCTTACATTGGAAAGCTGAGATCAAACATGCTGGGTACGAAGTTTATAATATATGATACACAGCCTCCCTATAATTCTGCCGATATACCACTGCCTCCGGGGAGGACAAGCCGGAGGTTTTATTCAAAAAAGGTATCACCAAAGGTCCCATCTGGGAGTTACAATATAGCTCAAGTAACATATGAATTAAATGTGCTTGGGACGCGAGGCCCAAGAAAGATGCACTGCATTATGCATTCAATACCAACATCAGCACTTGATGCTGGTGGCACGGTCCCTGGCCAACCAGAGCTTCTTCCTCGCCCCTTGGAGGACTCATTTCGGAGCATCTCCTTTTCAAAATCCTTAGATCGCTCTATCGAGTTCAGCAGCTCAAGATTTTCCGAGTTCACAGAAGGTGGCAATGAGGGTGATGACGGCAAGGCGAGGCCCTTGATTCTGAAGAACAAACCTCCAAGATGGCATGAACAATTGCAATGTTGGTGCCTTAACTTCCGTGGCCGGGTAACCGTAGCATCAGTCAAGAACTTTCAGTTGACTGCTGCTACCCAGCCGACTTCAGGCGATGCTCCAACACCGTCTCAGCCAGCGCCACCATCTGAGCAAGATAAGGTAATCTTACAGTTTGGTAAAATTGGGAAAGATATGTTCACCATGGATTATCGTTATCCTCTATCGGCCTTTCAGGCGTTTGCGATATGCTTGAGTAGCTTTGACACCAAATTGGCATGTGAGTAA	1278	0.4585	MSFRSIVRDVKDSIGSLSRRRFDVRMTGHHRGKSHGAIHDQPEVIDDSCWASLPPELLYDIIRRLEESESTWPARKHVVACAAVCRSWRTMCKEIVKSPEFSGKLTLPVSLKQPGSRDGTIQCFIKRDKSNSSYRLFLCLSPTLLVENGKFLLSAKRTRRTTYTEYVISMDAGNISRSSSSYIGKLRSNMLGTKFIIYDTQPPYNSADIPLPPGRTSRRFYSKKVSPKVPSGSYNIAQVTYELNVLGTRGPRKMHCIMHSIPTSALDAGGTVPGQPELLPRPLEDSFRSISFSKSLDRSIEFSSSRFSEFTEGGNEGDDGKARPLILKNKPPRWHEQLQCWCLNFRGRVTVASVKNFQLTAATQPTSGDAPTPSQPAPPSEQDKVILQFGKIGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE	425

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mibi06g0543	425	MobiDBLite	consensus disorder prediction	362	381	-	-
	Mibi06g0543	425	ProSitePatterns	Tub family signature 2.	410	425	IPR018066	-
	Mibi06g0543	425	PRINTS	Tubby superfamily signature	182	206	IPR000007	-
	Mibi06g0543	425	PRINTS	Tubby superfamily signature	233	260	IPR000007	-
	Mibi06g0543	425	PRINTS	Tubby superfamily signature	382	401	IPR000007	-
	Mibi06g0543	425	PRINTS	Tubby superfamily signature	403	425	IPR000007	-
	Mibi06g0543	425	PRINTS	Tubby superfamily signature	327	344	IPR000007	-
	Mibi06g0543	425	PRINTS	Tubby superfamily signature	345	361	IPR000007	-
	Mibi06g0543	425	PRINTS	Tubby superfamily signature	166	182	IPR000007	-
	Mibi06g0543	425	Gene3D	Tubby Protein; Chain A	109	419	IPR025659	-
	Mibi06g0543	425	Gene3D	-	45	98	-	-
	Mibi06g0543	425	SUPERFAMILY	F-box domain	41	93	IPR036047	GO:0005515
	Mibi06g0543	425	PANTHER	TUBBY-RELATED	42	423	-	-
	Mibi06g0543	425	Pfam	Tub family	111	420	IPR000007	-
	Mibi06g0543	425	SUPERFAMILY	Tubby C-terminal domain-like	99	425	IPR025659	-
	Mibi06g0543	425	FunFam	Tubby-like F-box protein	45	98	-	-
	Mibi06g0543	425	ProSitePatterns	Tub family signature 1.	345	358	IPR018066	-
	Mibi06g0543	425	FunFam	Tubby-like F-box protein	107	425	-	-
	Mibi06g0543	425	Pfam	F-box domain	50	97	IPR001810	GO:0005515

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mibi06g0543	Mibi-ChrMibi06	19761266	19763822	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mibi06g0543	1	425	TUB Transcription Factor Family	AT1G76900	66.667	0.0	581

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	TUB	Mibi06g0543		Tub	1.2e-114	CL0395