Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi06g0510 ATGGCTTCTCATTCTCACCCTTCCGCTTCTATCCATTTCTTCAAAATCATCTTGAAAACCAATCTTGAATCCATTAGGATTCCAAAGAAATTTACAGGGAGATATGGAAGTGATTTGTCACACCTAGTGTTTCTAAAGCCACCTGATGGGAAAGAGTGGAAAGTGCATGTGACAAAGCATGATAATGAAGTTTGGTTTCAAGAAGGGTGGAAGGAATTTGCTTGCTTTTACTCTCTAGATGAAGGGCATTTGATTTTGTTCAAGGTTGAAGGAACTTCTCAGTTTGATTTACGCATATTCGATAAAAGTGCATTAGAAATAGACTATCCTTCCTCTCCTAAGAATAATCTCAGTGATGATGAAATTGAAATCTCCGATGAGATGTCCCTAAACCGAAAGGATAGGCACAAAACACCTTTGTCATCTTCAAGGCCCCATAAGAAGACGAGAAGTATGCAGAATTTGCGTGTGGTTTCGGAAACTAATTATGGCCAATGTCAAGGAACAGAGTTAAAGAAATCAACCAATGCAGAATTGAAAATTCCTAAGAAGGAACCAGAAGAAGATACGGGAGCAAGAACTTTTACCAAGAGTACCTGCTTGAATTCTGAGCATAGAAGGAAGAGAGCATTAACTACTGTGGAAAAGATCAGAGCTATTAACAGTGCCAGATCTTTCGAATCAGAAAATCCCTTTTTCATGGTAATCATGCAGCCTTCAAATGTCACTCATAAATGCTACTTGGTGAGCCTTCTATCGTTATTATCTACTCTCAATTCTGTTATTTTAATCTTATCTTCAAAGGTGATGCCGACAAAATTCGCCAAAACACATTTGAAGAAAGAGTGTGGTGTTGTGCAACTTGAGGCCTTGGATGGGAGAACTTGGTCGGCTAGGTATAAGATTCCTACAATTAGAGATGGATGGAAGAAGTTTGTTATGGAAAATTGCTTGAAAGTGGGTCAAGTTTGTGTTTTTGAAATGATTGGTGGCTTGTTCAAAGTTCATATTTTCGGAGACAAGGAAGAAGTTAAAAGCACAAAGAAGACTTGCAATTTTGCAGAAGATCTGAAAGTTAGTCCTTTTAAGAAAGAGAAGATTCTTCTTGGAAAGGCTAGCTCTTTTAAATCTGAAAATGACCATTTTATGGTTAAGATGACACATGCTTACATTCATAGCAATTCGAACTTGCATGTGCCATCACAATTCGCAAGAAAACATCTTCATGACTGTACTGAGAGCATCAAACTTCTTGTACAAGATGTTGCTTGGCCTGTTGAATATGTATTTAGACTAAGTCCTCAAGGAATTGATGTTCATGAATTTTCTTCTGGTCGATGGAGGCAATTTCGCAAGGATAACGACTTGAAAGTAGGTGATATTTGTGTCTTCGAGCTCGTCCCCAACATCAAACTTACATTTCGAGTAACAATCTTAAGAGCCACCAAACATCTAGTTTAG 1461 0.3799 MASHSHPSASIHFFKIILKTNLESIRIPKKFTGRYGSDLSHLVFLKPPDGKEWKVHVTKHDNEVWFQEGWKEFACFYSLDEGHLILFKVEGTSQFDLRIFDKSALEIDYPSSPKNNLSDDEIEISDEMSLNRKDRHKTPLSSSRPHKKTRSMQNLRVVSETNYGQCQGTELKKSTNAELKIPKKEPEEDTGARTFTKSTCLNSEHRRKRALTTVEKIRAINSARSFESENPFFMVIMQPSNVTHKCYLVSLLSLLSTLNSVILILSSKVMPTKFAKTHLKKECGVVQLEALDGRTWSARYKIPTIRDGWKKFVMENCLKVGQVCVFEMIGGLFKVHIFGDKEEVKSTKKTCNFAEDLKVSPFKKEKILLGKASSFKSENDHFMVKMTHAYIHSNSNLHVPSQFARKHLHDCTESIKLLVQDVAWPVEYVFRLSPQGIDVHEFSSGRWRQFRKDNDLKVGDICVFELVPNIKLTFRVTILRATKHLV 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi06g0510 486 ProSiteProfiles B3 DNA-binding domain profile. 10 103 IPR003340 GO:0003677
Mibi06g0510 486 ProSiteProfiles B3 DNA-binding domain profile. 382 482 IPR003340 GO:0003677
Mibi06g0510 486 Gene3D - 6 104 IPR015300 -
Mibi06g0510 486 CDD B3_DNA 12 101 IPR003340 GO:0003677
Mibi06g0510 486 SUPERFAMILY DNA-binding pseudobarrel domain 228 335 IPR015300 -
Mibi06g0510 486 PANTHER B3 DOMAIN-CONTAINING 225 469 - -
Mibi06g0510 486 SUPERFAMILY DNA-binding pseudobarrel domain 375 481 IPR015300 -
Mibi06g0510 486 Pfam B3 DNA binding domain 267 338 IPR003340 GO:0003677
Mibi06g0510 486 Pfam B3 DNA binding domain 21 102 IPR003340 GO:0003677
Mibi06g0510 486 Pfam B3 DNA binding domain 382 481 IPR003340 GO:0003677
Mibi06g0510 486 ProSiteProfiles B3 DNA-binding domain profile. 253 341 IPR003340 GO:0003677
Mibi06g0510 486 MobiDBLite consensus disorder prediction 127 153 - -
Mibi06g0510 486 SMART B3_2 13 103 IPR003340 GO:0003677
Mibi06g0510 486 SMART B3_2 382 482 IPR003340 GO:0003677
Mibi06g0510 486 SMART B3_2 260 341 IPR003340 GO:0003677
Mibi06g0510 486 CDD B3_DNA 381 480 IPR003340 GO:0003677
Mibi06g0510 486 Gene3D - 210 342 IPR015300 -
Mibi06g0510 486 Gene3D - 362 484 IPR015300 -
Mibi06g0510 486 CDD B3_DNA 231 338 IPR003340 GO:0003677
Mibi06g0510 486 SUPERFAMILY DNA-binding pseudobarrel domain 11 110 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi06g0510 Mibi-ChrMibi06 18202258 18207807 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi06g0510 369 485 B3 DNA Binding Superfamily AT3G18990 29.915 6.14e-12 65.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Mibi06g0510 B3 6.7e-14 CL0405