Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi06g0454 ATGTTCTTTAGTGAATTGATTGGGCAGAATATTGTGGTCCAATCACTTATAAATGCAGTTTCAAGAGGTCGAATTGCTTCTGTTTATCTTTTCCAAGGTCCTCGTGGGACTGGTAAAACATCAGTGGCGAGGATTTTTGCTGGTGCATTGAATTGTATTGCTCCTGATGAAACTAAACCTTGTGGTTATTGCAGGGAATGTACAAATTTCATTTCTGGGAAAAGCAGGGACATCTTGGAAGTTAATGGAACCAATAAAAAAGGGATTGATAGAGTTAGACATTTATTGAAAAGATTATCAGTTAGGTCTTCTTCAGCCGCATCACGATACATGGTCTTTGTTATTGATGAGTGTCATTTGTTACCCTCTAAGACATGGTTGGCAATTCTTAAATCTCTTGAAGATCGACCTCAGCGAGTTGTATTCATATTTATAACAACAGATCTTGACAATGTGCCCCGTACAATACAATCTAGATGCCAAAAGTACCTTTTTAACAAGATTAAAGATGCAGATATAGTAGCACGGTTAAGGAAGATATCTGCTGAGGAGAACCTGGATGTTGAAACAGATGCGTTGGATCTTATTGCTGTGAATGCAGATGGCTCACTTCGGGATGCAGAAACTATGTTAGAACAGCTGAGTTTGCTTGGAAAAAGAATTACTACCAGTCTTGTGAACGAGCTAATGGGGGTTGTTTCAGATGAAAAATTACTTGAACTTTTGGAGTTAGCAATGTCATCAGACACTGCAGAAACAGTGAAAAGGGCCAGAGAATTGATGGACTCTGGAGTTGATCCAATTGTTTTGATGTCCCAACTGGCAACCCTCATTATGGACATCATTGCTGGATCATATACTGTCATAGATGATAAACCTGGTGATTCATTTTTTGGCGGACGAAGTTTGAATGAATCGGAGTTGGAGAGATTAAAGCATGCTTTGAAGCTTCTCTCGGAGGCTGAGAAACAGTTAAGGACTTCTAGTGAACGCTCGACATGGTTCACTGCTACTTTGTTACAACTTGGTTCGATGCCTTCGCCGGATATTACTCAGAGCACCAGCAGCAGGAGGCAGAGCAGCAAGGCAACTGATGAAGATCCATCAAGTGCTTCAAGAGAAGTAATTGCTCACAAGCACAAGGCAGATGTTCAGTGTATGCCTCGCAGATCTACTTCACCTGCATCTCTGCACAAAGGTGTAAATAGCAATCCCAGCCACCAAAGGGAGTTATCATCAAAGTTTGATGGTTTCAGCTTGAGTTCAAAGCCGTCAAATAGCCCAATCATAGATAATAATGCCGCACTTGTTTCATTTGATGATCGCGCAGTTAGTAATGTGACATTTAGATGCATAGATTCAGGGAAGTTATGTGATATCTGGACACATTGTATTGGAAGGTGCCACTCAAAGACTTTGAAGCAGCTGCTACATAATCATGGAAAACTTGTATCCATATGTGAAGTTGAAGGCCTGCTGGTCGCATATGTGGCATTTGTGGATGCAGATATTAAACTTAGGGCTGAAAGGTTTTTGAGCAGCATAACAAACTCCATGGAAATGGTTTTGAGAAGAAATGTAGAGGTCAGAACTATCCACTTGCTTGATGGTGAATGTGAAGAACAGATCACTCTGTCAGGTTCAAAACAGGTAGAATCAATAATAGCAAATCAGAAGGAACGTAGAGAAGGTCATACTAGAGGAAAAAACACTTCCTCAGATTTTCCTCCGTTGCTGGATGGAAACTTTCAATCTACCAATGATGCGTCAGATTTACTGGTTGATGGAAATGGTACAAGAGAAAAATCAGATATTCCAATGCAAAGGATTGAATCCATTATTCGTGAGCAGAGGCTGGAAACTGCTTGGTTACAGGCTGTAGGAAAAGGCTCCCCAGGATCGTTAAGTCGCATGAGACCTGAAAAGAATCAGGTTCTGCCTCAGGAAGGTCTCTACTGTAAAGATCCAACAGAATCCATGAACTCAACGAGGTTCTCCTCTCAACATAGGGAAGATGACATCAGTCATGAAGCAAAGGTTTTGAAAGCTAAAAATGAGACGGTCCTACGGAAGGAGCAGATTGGAATTGGAAGAAGGGCTGACTGTTACTCCATGTCCCCTAGTTTATTGCATGATGGCAGTTTAGTGACAACTTCCATCAAAGAGAGTCTGGGATATGAATCAGGCCCAGGAGCTAGAGGTTGTAATGGATTTTTGTGTTGGAACAACTCCAGCCGAAGAAGGGTAAAGGTAAAAGGCACCCCAGTGAGGAAAGTGGGACGCTTTTCATTGTTTGGTGAGTGTGGTAAGTCAAGGAAAAAGAGTTGA 2328 0.4149 MFFSELIGQNIVVQSLINAVSRGRIASVYLFQGPRGTGKTSVARIFAGALNCIAPDETKPCGYCRECTNFISGKSRDILEVNGTNKKGIDRVRHLLKRLSVRSSSAASRYMVFVIDECHLLPSKTWLAILKSLEDRPQRVVFIFITTDLDNVPRTIQSRCQKYLFNKIKDADIVARLRKISAEENLDVETDALDLIAVNADGSLRDAETMLEQLSLLGKRITTSLVNELMGVVSDEKLLELLELAMSSDTAETVKRARELMDSGVDPIVLMSQLATLIMDIIAGSYTVIDDKPGDSFFGGRSLNESELERLKHALKLLSEAEKQLRTSSERSTWFTATLLQLGSMPSPDITQSTSSRRQSSKATDEDPSSASREVIAHKHKADVQCMPRRSTSPASLHKGVNSNPSHQRELSSKFDGFSLSSKPSNSPIIDNNAALVSFDDRAVSNVTFRCIDSGKLCDIWTHCIGRCHSKTLKQLLHNHGKLVSICEVEGLLVAYVAFVDADIKLRAERFLSSITNSMEMVLRRNVEVRTIHLLDGECEEQITLSGSKQVESIIANQKERREGHTRGKNTSSDFPPLLDGNFQSTNDASDLLVDGNGTREKSDIPMQRIESIIREQRLETAWLQAVGKGSPGSLSRMRPEKNQVLPQEGLYCKDPTESMNSTRFSSQHREDDISHEAKVLKAKNETVLRKEQIGIGRRADCYSMSPSLLHDGSLVTTSIKESLGYESGPGARGCNGFLCWNNSSRRRVKVKGTPVRKVGRFSLFGECGKSRKKS 775
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi06g0454 775 CDD HLD_clamp_pol_III_gamma_tau 168 231 IPR045085 -
Mibi06g0454 775 Pfam DNA polymerase III subunits gamma and tau domain III 222 288 IPR022754 GO:0003887
Mibi06g0454 775 MobiDBLite consensus disorder prediction 652 673 - -
Mibi06g0454 775 Coils Coil 304 331 - -
Mibi06g0454 775 Gene3D - 1 166 IPR027417 -
Mibi06g0454 775 SUPERFAMILY post-AAA+ oligomerization domain-like 239 340 IPR008921 GO:0003677|GO:0006260
Mibi06g0454 775 SMART AAA_5 25 187 IPR003593 -
Mibi06g0454 775 TIGRFAM dnaX_nterm: DNA polymerase III, subunit gamma and tau 2 342 IPR012763 GO:0003887|GO:0005524|GO:0006260|GO:0009360
Mibi06g0454 775 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 17 215 IPR027417 -
Mibi06g0454 775 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 2 443 - -
Mibi06g0454 775 FunFam DNA polymerase III subunit gamma/tau 169 231 - -
Mibi06g0454 775 Gene3D - 169 231 - -
Mibi06g0454 775 MobiDBLite consensus disorder prediction 360 386 - -
Mibi06g0454 775 MobiDBLite consensus disorder prediction 345 411 - -
Mibi06g0454 775 Gene3D - 232 346 - -
Mibi06g0454 775 MobiDBLite consensus disorder prediction 389 411 - -
Mibi06g0454 775 MobiDBLite consensus disorder prediction 558 578 - -
Mibi06g0454 775 MobiDBLite consensus disorder prediction 345 359 - -
Mibi06g0454 775 Pfam DNA polymerase III, delta subunit 8 168 - -
Mibi06g0454 775 CDD AAA 7 165 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi06g0454 Mibi-ChrMibi06 16772212 16779084 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi06g0454 9 291 Core DNA Replication Machinery Family AT1G21690 24.315 1.04e-13 71.2