LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mibi06g0448	ATGGACTCAAAAACAAGTGCTAGAGCTCCCTCCAAACCGCATCTGAAGACAGTTTCTGAACAGGCAGTAGAGGCAAAAGACATCCAGTCTTCTCCATCCCTGGTTTCAAAATTAGGTAAACTTGAACTGGGTACTCCTGAAAGTTCATCAAAATCTGTGCAAAGCACTTCAAAGCAGAATATTGGAGAATTTTCTGAAAGCAAGGCAAGAATTTTAAACCAAAAGGGTCTTGCAGATTCCTTGAGTAATAAATGGGGTTCTGTTGCTTCCTCATCTGTCCTTGAGCAGGCATGTGGAGGAGTTGACCATGCTATTAATGAAAGTAGGGGTTCGCAGGATAGTTTTATTGATCAAGAAAAAAAGCCATCAGAGTATGGAAGTGTGAAGAACAGTTCTGTTTCAGCTAAATTTAGTGATGGGGCAAGCAGTTTTGGAAAAACCAGTTTAAGTGCCAAAGTCAGTGATCGAGCTGATTATGTTGAAAGTGGTAAGAGTAGTATCTGCAGAGGAAGCACGAGCAGTGACGTCAGTGATGAGAGTGCATGTAGTAGCTTTAGTAGTAGCATAAACAAACCACATAAAGCAAATGACTTGAGATGGGAAGCCATCCGAGTTGTTCGAGCTAGAGATGGGATGCTGGGTTTAGGTCACTTTAGACTACTGAAGAGGTTGGGCTGTGGGGATATTGGGAGTGTGTATCTCTCAGAGTTGAGTGGAACTAAATGCTATTTTGCAATGAAGGTAATGGATAAAGCATCACTAGCAAGTCGTAAGAAGTTGCTTCGTGCTCAGACTGAAAGGGAAATACTGCAGTCACTGGACCATCCTTTTCTTCCAACATTGTATACTCATTTTGAGACAGAGAAGTTCTCATGCTTGGTAATGGAATTCTGCCCTGGTGGAGACTTGCATACACTTAGGCAGAAACAGCCAGGAAAGCATTTTGCTGAGCAGGCAGTAAAGTTTTATGTAGCTGAAGTCTTGCTTGCTTTGGAATACCTCCATATGCTTGGAATTGTCTATCGTGACCTCAAGCCAGAAAATGTCCTTGTGAGAGATGATGGACATATTATGCTCTCTGACTTTGATCTTTCCCTCCGTTGTGCAGTTAGTCCAACTCTTGTAAAAACCTCTTCAGCAGAATCGGAGACTTCAAGAAAGAATCCTGTTTACTGTGTCCAGCCAGCTTGTATTGAGCCACCTTCCTGCATCCAGCCATCTTGTGTTGCTCCTACAACATGCTTTTCACCCCGGCTCTTTTCTAGCAAATCAAAGAAGGATAGGAAACACAAGACTGAAATCGGAAACCAAGTGACTCCATTACCTGAGCTTATTGCGGAGCCTACAGATGCTCGTTCTATGTCCTTTGTTGGAACTCATGAGTATTTGGCACCTGAGATTATAAAGGGTGAGGGTCATGGAAGTGCAGTTGATTGGTGGACTTTTGGAATCTTTCTATACGAACTGTTGTTTGGTAAAACACCTTTTAAGGGATCTGGTAACCGAGCTACATTGTATAATGTCGTAGGTCAGCCTCTAAAATTTCCAGACTCACCTGTTGTGAGTTTCGCAGCTCGGGATCTTATAAGGGGTTTGCTTGTAAAGGAACCTCAGCACAGATTGGCGTACAAACGTGGGGCTACTGAGATAAAGCAACATCCCTTTTTCGAGGGTGTGAATTGGGCATTAATCCGTTGTGCCACCCCACCGGAGATACCCAAGCCTGTAGAGTATGAGAAGATACCTACCCCAGCATCTTCAGGCAGTGAAAAGGTGGTCCACCCCATGTCAATTCCTGATAAAGGTTCTGATAAATATCTTGAATTTGATTTCTTTTAG	1839	0.4312	MDSKTSARAPSKPHLKTVSEQAVEAKDIQSSPSLVSKLGKLELGTPESSSKSVQSTSKQNIGEFSESKARILNQKGLADSLSNKWGSVASSSVLEQACGGVDHAINESRGSQDSFIDQEKKPSEYGSVKNSSVSAKFSDGASSFGKTSLSAKVSDRADYVESGKSSICRGSTSSDVSDESACSSFSSSINKPHKANDLRWEAIRVVRARDGMLGLGHFRLLKRLGCGDIGSVYLSELSGTKCYFAMKVMDKASLASRKKLLRAQTEREILQSLDHPFLPTLYTHFETEKFSCLVMEFCPGGDLHTLRQKQPGKHFAEQAVKFYVAEVLLALEYLHMLGIVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLVKTSSAESETSRKNPVYCVQPACIEPPSCIQPSCVAPTTCFSPRLFSSKSKKDRKHKTEIGNQVTPLPELIAEPTDARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLFGKTPFKGSGNRATLYNVVGQPLKFPDSPVVSFAARDLIRGLLVKEPQHRLAYKRGATEIKQHPFFEGVNWALIRCATPPEIPKPVEYEKIPTPASSGSEKVVHPMSIPDKGSDKYLEFDFF	612

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mibi06g0448	612	Pfam	Protein kinase domain	219	371	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Mibi06g0448	612	Pfam	Protein kinase domain	453	556	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Mibi06g0448	612	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	339	351	IPR008271	GO:0004672\|GO:0006468
	Mibi06g0448	612	CDD	STKc_phototropin_like	217	575	-	-
	Mibi06g0448	612	PANTHER	FLIPPASE KINASE 1-RELATED	51	579	-	-
	Mibi06g0448	612	FunFam	Serine/threonine-protein kinase AGC1-7	449	574	-	-
	Mibi06g0448	612	FunFam	serine/threonine-protein kinase D6PK-like	302	369	-	-
	Mibi06g0448	612	MobiDBLite	consensus disorder prediction	1	66	-	-
	Mibi06g0448	612	MobiDBLite	consensus disorder prediction	104	146	-	-
	Mibi06g0448	612	MobiDBLite	consensus disorder prediction	125	146	-	-
	Mibi06g0448	612	SUPERFAMILY	Protein kinase-like (PK-like)	192	594	IPR011009	-
	Mibi06g0448	612	Gene3D	Transferase(Phosphotransferase) domain 1	450	574	-	-
	Mibi06g0448	612	Gene3D	Phosphorylase Kinase; domain 1	216	301	-	-
	Mibi06g0448	612	FunFam	Serine/threonine-protein kinase D6PK-like	216	301	-	-
	Mibi06g0448	612	MobiDBLite	consensus disorder prediction	43	66	-	-
	Mibi06g0448	612	SMART	serkin_6	218	556	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Mibi06g0448	612	Gene3D	Transferase(Phosphotransferase) domain 1	302	377	-	-
	Mibi06g0448	612	ProSiteProfiles	Protein kinase domain profile.	218	556	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mibi06g0448	Mibi-ChrMibi06	16602038	16604708	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mibi06g0448	113	612	AGC Kinase Gene Family	AT5G47750	83.101	0.0	847

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	AGC_RSK-2	Mibi06g0448		Pkinase	1e-36	CL0016

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Mibi06g0448	06	16602038	16604708	Mibi06g0448	06	16602038	16604708	ECH