Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi06g0444 ATGGATTCTGGAGGCTTTCATGGCTACCGCAAGCTCCCTAACACTTCTTCCCCAGGGTTGAAGTTATCTACATCAGCATCAGCACCGGAGACAATGAACAACCACAACCACAACCACTCATCCTCCTCATCCACCACCGCTGCCACCGACGACGGCTGCGAATGCACGGTGAGGGAGCAAGACAGGTTCATGCCAATCGCCAACGTGATAAGAATCATGCGCAAGATCCTCCCTCCACATGCAAAAATCTCCGACGACGCCAAGGAGACCATCCAAGAGTGTGTTTCTGAGTACATCAGCTTCATCACCGGTGAGGCCAACGAGAGGTGCCAGAGGGAGCAAAGGAAGACAATAACAGCCGAGGACGTTCTTTGGGCCATGAGCAAGCTTGGTTTTGATGACTACATTGAACCCTTAACCATGTACCTTCATCGGTACCGCGAAATGGAGGGCGACCGGACCTCCATGCGCGGCGAGCCGCTCGGAAAAAGGACGGTGGAGCCGACGTATGGGGCGCCAGGGTTAGGTGCTTTTGTGCCACCGTTTCACATGGGACATCCGAATGGGTACTATGGAGCCATGGGAGGGTATATGAGAGAGCATGGGCAGAATAATAATGGAGGAGGAGGAGGAGGAGGAGGGTCTTCCTCATCACAGGGTGAACCAAATGGTCAATACAAGTGA 684 0.5351 MDSGGFHGYRKLPNTSSPGLKLSTSASAPETMNNHNHNHSSSSSTTAATDDGCECTVREQDRFMPIANVIRIMRKILPPHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTITAEDVLWAMSKLGFDDYIEPLTMYLHRYREMEGDRTSMRGEPLGKRTVEPTYGAPGLGAFVPPFHMGHPNGYYGAMGGYMREHGQNNNGGGGGGGGSSSSQGEPNGQYK 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi06g0444 227 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 34 189 IPR027113 GO:0001228|GO:0006355|GO:0016602
Mibi06g0444 227 FunFam Nuclear transcription factor Y subunit B-6 52 168 - -
Mibi06g0444 227 PRINTS CCAAT-binding transcription factor subunit A signature 129 147 - -
Mibi06g0444 227 PRINTS CCAAT-binding transcription factor subunit A signature 110 128 - -
Mibi06g0444 227 PRINTS CCAAT-binding transcription factor subunit A signature 91 109 - -
Mibi06g0444 227 Gene3D Histone, subunit A 53 167 IPR009072 GO:0046982
Mibi06g0444 227 SUPERFAMILY Histone-fold 60 160 IPR009072 GO:0046982
Mibi06g0444 227 MobiDBLite consensus disorder prediction 1 50 - -
Mibi06g0444 227 ProSitePatterns NF-YB/HAP3 subunit signature. 94 110 IPR003956 GO:0005634|GO:0006355|GO:0043565
Mibi06g0444 227 MobiDBLite consensus disorder prediction 16 50 - -
Mibi06g0444 227 MobiDBLite consensus disorder prediction 208 227 - -
Mibi06g0444 227 MobiDBLite consensus disorder prediction 202 227 - -
Mibi06g0444 227 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 63 127 IPR003958 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi06g0444 Mibi-ChrMibi06 16430543 16434452 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi06g0444 1 190 CCAAT-HAP3 Transcription Factor Family AT5G47670 61.650 1.03e-73 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Mibi06g0444 CBFD_NFYB_HMF 6.6e-26 CL0012