Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi06g0406 ATGAAGCCCATCTCTCTCCACCATCATGTCTCCCTCCTCCTCCTCCTCCTCCTCGCGCCCCTCGTCTCTGCACAGCCTCCCAACAACAACGATCAACCCCAACAGCTGAACAGCCTGACTCCCTCCATGGCAATCATCATCGTCATCCTCATAGCCGCCCTCTTCCTCATGGGCTTCTTCTCCATCTACATCCGCCACTGCGCCGACTCCCCCTCCGGCAGTGTCCGCCCCCTCGGCCTCCTCCGCTCCTCCCTCCGCCGGCCCCCTCGCGGCCTCGACCCCCTCCTCATCCAAACCTTCCCCACTCTCGAGTACTCCCTCGTCAAAGCCCACAAGATCGGCAAGGGAGCCCTCGAATGCGCCATCTGCCTCTCCGAATTCCAAGACTCCGAAACCCTCCGTTTGATCCCCAACTGCGACCACGTCTTCCACCCCAACTGCATCGACGAGTGGCTCGCCACTCACACCACCTGCCCCGTCTGTCGAGCCGACCTTCTCCCCCGCCCTGACCACTCCTTACCTCCACTTCCCCATCTCGAAGCTCAAATCGACGTCGTCGTCGTCGCCGCCGAACCCGAACCGGAGTCTCATCATACAGTGGAGGCCGACCCTGAACCGGTGGAGTCCGATGTTGCGTGGGGGTCTCATCAGACGGTGAAGCGGAACCGGACGCGGGGGTCTAGATCGGGCCGGCCGAGGAGGTTTCCGCGGTCGCACTCGACCGGGCATTCGTTGGTCCAACCGGGCGAGGATACGGAACGGTTCACGCTGAGATTGCCGGCGGAAGTGAGGGATCAGATAATGAAGAGGGAATTGCATAGGGCGAAGAGTTTGGTGGTGTTGCCTAGGGAAGGTAGTTCGAGGAGAGGGTATAGGATTAGTGGAGATGGGAGCAGCAGAGGGGGCAGGTATTCAAGGAGGGTGGACCGCTGGGTTTTCACCATGGCACCTCCCTTCCTTGTGAGGGCCTCTTCTATTAGGTCACCCAAAGTGGGAGGCAGCGTCGGGGAAGGAACCTCCAGTCAGGTCGTTGTGCCGCCGCCGGTGGATGCGGCCCGGCCTCCGCTTTAA 1071 0.6153 MKPISLHHHVSLLLLLLLAPLVSAQPPNNNDQPQQLNSLTPSMAIIIVILIAALFLMGFFSIYIRHCADSPSGSVRPLGLLRSSLRRPPRGLDPLLIQTFPTLEYSLVKAHKIGKGALECAICLSEFQDSETLRLIPNCDHVFHPNCIDEWLATHTTCPVCRADLLPRPDHSLPPLPHLEAQIDVVVVAAEPEPESHHTVEADPEPVESDVAWGSHQTVKRNRTRGSRSGRPRRFPRSHSTGHSLVQPGEDTERFTLRLPAEVRDQIMKRELHRAKSLVVLPREGSSRRGYRISGDGSSRGGRYSRRVDRWVFTMAPPFLVRASSIRSPKVGGSVGEGTSSQVVVPPPVDAARPPL 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi06g0406 356 CDD RING-H2_PA-TM-RING 119 162 - -
Mibi06g0406 356 Pfam Ring finger domain 119 162 IPR001841 -
Mibi06g0406 356 FunFam E3 ubiquitin-protein ligase ATL6 81 168 - -
Mibi06g0406 356 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 84 167 IPR013083 -
Mibi06g0406 356 ProSiteProfiles Zinc finger RING-type profile. 120 162 IPR001841 -
Mibi06g0406 356 MobiDBLite consensus disorder prediction 194 250 - -
Mibi06g0406 356 SMART ring_2 120 161 IPR001841 -
Mibi06g0406 356 MobiDBLite consensus disorder prediction 328 356 - -
Mibi06g0406 356 MobiDBLite consensus disorder prediction 221 238 - -
Mibi06g0406 356 PANTHER RING FINGER DOMAIN-CONTAINING 27 165 - -
Mibi06g0406 356 SUPERFAMILY RING/U-box 116 169 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi06g0406 Mibi-ChrMibi06 15109392 15110462 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi06g0406 10 334 Rapid Response to Elicitors AT3G05200 48.368 9.72e-90 273