Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi06g0377 ATGTCTATAATCGATTCCCCGATCGTCGATTACGTTCATCAGCTCGGAGAAGGTGGTGCCGATCATCACCACCGTTCCTCAAACAAACGTAAATTTGATGATTTCACTGTTGCCTTCAACGATGACGGCGAGAATTTGGCGGATTTTTGTGAGTTAGTATCGGTAAGAATGAGGAGAGAAGACCACAAAAATTCTTGTAATTCTGAAACTCTTGATGGTGATGTTGTTGGTGATAGGTTAACGGGAAGATCATCAACTTATTGTCGGGCACGGTCTTCGTCTTCGTCGAAGTTGCAATTTTTCATTCGATTGATGACGGAAGGGAAAACTTTGGTGTTCGAAGCTTTTCCAAAGGATACCATAAAATCGATTCATGAACGTATCGAAGCAATTACGGGCATTCCGATGTTTGAACAGAGATTATTGTACATGGGTAAACAGCTTTATTTGGAACAGACTCTGGTAGAGTGTGCAATTGAGAGGGATTGTCACCTTCATTTGGTTGGGCGCATACGCAGTACAAAGCATCCTCAAGCTTGGCAGGTAATCAATGATATGGTATCATTAATTTGGCGTCTTTGCACTGGTGAAGTGAGACTTGGTGCCTTAAAACAAATCAAAGGCCTTATGACTGAATATTTAGAAATGATTTCTAGGATGGATAATGATGCAGCTTCCGAGTATTTCCAGATATTTTTGTCTTCATCTGCCCCTGTTGTGCTAGTTAGGCTCTATATGTCACCCTATGTAGGTAACAAAGATTGTGCTGATTGTTCCATTAGGCATTTTATGAGTTCCTGTCGCAGTACCTTGTCTAAATCATTGCATACTAATTGTGCGCGTGTGGTGCTGGAGTTTTGCAAGCTACTAAGAAGGGCAGCTCCTGAGGATTCTTTGTATCATTGTTGCCGGAGCACCTTTGGGTATTTATTGGAGGCTGCTAGCATTTCCTATGTTTCTGAGGGTGATAAGGAGCTGATTTTAATTCATGATATTCTCCCTTTCGTTCGGGAGATTGCAAATAGATTGTTGAGGGCTTTGGATATGAGTATGGAAACCCCCACTAGAATAGGGCCAATGATGAGTGATGTTCAGGATTTTGCTGCATTCTTACTCCCTCTAAGGACTAGAATCAACAAGCTACAAGCTTTAAAGAGTCTAAATTCTTCCAAGTCTATTGAAAAGCTAAACAAGCTCCAGTTACATGTGGAAGAAGATGATATTCATCTTATTTTTAGTGAAATATTACAAAAAATGGATCAGTGCCTTAGTAAAATGGAAGAAATTTTGTCTTCCAAGGAACAAGAAGAGGGATATCATCTTTATTCAGCATGGTCTCAGTATCTTTCCATCTTGAAGGAATTGTATCACCTTTCTAAGCTCTATGAAAGGGCTGAAGAAGAATTTTGGTGGGTTTTGAGACGTCAGAGAAGTATGCTGGTTCTACTTATCACCCAGTTTGCTAGGAGAACTGATGACCATCAGTGGATTCTGGAGCACAAGTGCATAACGAATTTTGAATCTAGAAGGCATTTGATGATGATGATGTTTCCAGATATAAAAGAAGACTATGAGGAATTGCATGAGATGCTCATTGACCGGTCTCAGCTCTTGGTAGAATCATTTGAATACATAGCACGGGCGGAGCCTGAATCTCTACATGCTGGTCTGTTTATGGAATTCAAAAATGAGGAAGCTACAGGTCCAGGTGTATTGCGAGAGTGGTTTCTCTTGGTATGCCAAGCTTTATTTAATCCACAAAACGCTCTCTTTGTGGCATGCCCAAATGACCAGAGGAGATTTTTCCCCAATCCTGCATCCAAGGTGCATCCTCTGCACCTTGATTACTTCACCTTCTCTGGTCGAGTTATAGCATTAGCTTTAATGCATAGGGTGCAAGTGGGCATTGTTTTGGATCGTGTGTTTTTCATGCAATTGGCTGGAAAAAATATTACTTTAGAAGATATACGGGATGCTGATCCAGGTTTATATAATAGTTGCAAGAAAATGTTGGAGATGGATGCTGATTTGATTGATTCAGATGCTCTAGGACTGACCTTTGATAGAGAGGTGGAGGAATTAGGATCCAGGAAAGTGGTTGAGCTTTGCCCTGGTGGGAAAAGCCGTGTTGTTAACAGTAAGAACAGGGAGGAGTATGTTGATCTTCTTTTAAAGGATCGTTTTGTAACATCTATTTCTGAGCAGGTGTCATATTTTGCCCAAGGCTTTGCTGATATTCTTTGCAACTCGAAACTCCAACAGTTCTTTTTTCAAAGTCTAGATCTTGAAGATCTTGATGGGATGCTGTATGGGAGTGAAAGTGCCATTTCTGTTGAAGATTGGAAGGCACATACCGAGTACAATGGCTACAGAGAGACAGATCCTCAAATTTCTTGGTTCTGGGAGATTGTAGGGAATTTGTCAGCTGAGCAAAGGAAGGTTCTTTTATTTTTTTGGACGTCTCTGAAGTATTTACCTGTGGAAGGTTTCAAAGGTTTGTCTTCTCGTCTCTACATCTACAACTCCATGGAACCCAATGATCACCTTCCTTCATCGCACACATGCTTCTTCCGGCTGTGTTTCCCTCCATATTCATCTTTCTCTGTGATGCAAGATCGTCTCCGAATCATCACACAGGAACACATTGGCTGCAGCTTTGGTACTTGGTGA 2670 0.4116 MSIIDSPIVDYVHQLGEGGADHHHRSSNKRKFDDFTVAFNDDGENLADFCELVSVRMRREDHKNSCNSETLDGDVVGDRLTGRSSTYCRARSSSSSKLQFFIRLMTEGKTLVFEAFPKDTIKSIHERIEAITGIPMFEQRLLYMGKQLYLEQTLVECAIERDCHLHLVGRIRSTKHPQAWQVINDMVSLIWRLCTGEVRLGALKQIKGLMTEYLEMISRMDNDAASEYFQIFLSSSAPVVLVRLYMSPYVGNKDCADCSIRHFMSSCRSTLSKSLHTNCARVVLEFCKLLRRAAPEDSLYHCCRSTFGYLLEAASISYVSEGDKELILIHDILPFVREIANRLLRALDMSMETPTRIGPMMSDVQDFAAFLLPLRTRINKLQALKSLNSSKSIEKLNKLQLHVEEDDIHLIFSEILQKMDQCLSKMEEILSSKEQEEGYHLYSAWSQYLSILKELYHLSKLYERAEEEFWWVLRRQRSMLVLLITQFARRTDDHQWILEHKCITNFESRRHLMMMMFPDIKEDYEELHEMLIDRSQLLVESFEYIARAEPESLHAGLFMEFKNEEATGPGVLREWFLLVCQALFNPQNALFVACPNDQRRFFPNPASKVHPLHLDYFTFSGRVIALALMHRVQVGIVLDRVFFMQLAGKNITLEDIRDADPGLYNSCKKMLEMDADLIDSDALGLTFDREVEELGSRKVVELCPGGKSRVVNSKNREEYVDLLLKDRFVTSISEQVSYFAQGFADILCNSKLQQFFFQSLDLEDLDGMLYGSESAISVEDWKAHTEYNGYRETDPQISWFWEIVGNLSAEQRKVLLFFWTSLKYLPVEGFKGLSSRLYIYNSMEPNDHLPSSHTCFFRLCFPPYSSFSVMQDRLRIITQEHIGCSFGTW 889
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi06g0377 889 Pfam HECT-domain (ubiquitin-transferase) 578 881 IPR000569 GO:0004842
Mibi06g0377 889 Gene3D Hect, E3 ligase catalytic domain 649 731 - -
Mibi06g0377 889 Gene3D Hect, E3 ligase catalytic domains 531 758 - -
Mibi06g0377 889 PRINTS Ubiquitin signature 130 150 IPR019956 -
Mibi06g0377 889 PRINTS Ubiquitin signature 109 129 IPR019956 -
Mibi06g0377 889 PRINTS Ubiquitin signature 151 172 IPR019956 -
Mibi06g0377 889 SMART ubq_7 100 170 IPR000626 GO:0005515
Mibi06g0377 889 FunFam E3 ubiquitin-protein ligase UPL5 773 888 - -
Mibi06g0377 889 Pfam Ubiquitin family 101 170 IPR000626 GO:0005515
Mibi06g0377 889 ProSiteProfiles Ubiquitin domain profile. 98 174 IPR000626 GO:0005515
Mibi06g0377 889 Gene3D Hect, E3 ligase catalytic domain 773 888 - -
Mibi06g0377 889 SMART hect_3 547 887 IPR000569 GO:0004842
Mibi06g0377 889 Gene3D - 90 186 - -
Mibi06g0377 889 SUPERFAMILY Ubiquitin-like 71 174 IPR029071 -
Mibi06g0377 889 ProSiteProfiles HECT domain profile. 549 889 IPR000569 GO:0004842
Mibi06g0377 889 SUPERFAMILY Hect, E3 ligase catalytic domain 524 876 IPR035983 GO:0004842
Mibi06g0377 889 PANTHER HECT DOMAIN UBIQUITIN-PROTEIN LIGASE 102 887 - -
Mibi06g0377 889 CDD HECTc 528 887 IPR000569 GO:0004842
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi06g0377 98 172 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 40.000 7.76e-11 58.9