Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi06g0265 ATGGCCAGAGGGAAGGTAAAGCTCGCATTCATCACCAGTGAATCTGCAAGGAAGACAACCTATAAGAAGAGGAAAAATGGCATGGTGAAGAAGTTAGGTGAACTGGTCACCCTTTGTGGGGTTGAGGCATGTATGATCATTTACAGTCCTTATGAACCTGAGCCTGAGGTTTGGCCTTCCTCCAGGGCAGTCCAAGGCACAATCTTGAGGTATAGGAAGATGCCTGAAATGGAGCAGTGTAGAAAGATGTTGAACCAGATGAGCTTCATGAGGGAGAGGATCCAGAAATTAAGCGAGCAGGTGAAGAAGATGAGGAAGAGCAACGGGGAGAAGGAGCTGACCTTAATCATAAAGATAGAGGCAATGAAGATGGAGGAGCCTCCGAATGAAATCCAAATCCAAGGTGAGGGACAAGCACAAGTTGATATGGAGATTAACATAACCACATTACAGAAGCAACAAAATTTTATGGAGCTGATGAACAGTGATGGGGATGAGACACTTCCATTTGGAGAGGCCGATCTCTATAATGCTTGGCCTGGCCCCTTTTTCTTCTGA 558 0.457 MARGKVKLAFITSESARKTTYKKRKNGMVKKLGELVTLCGVEACMIIYSPYEPEPEVWPSSRAVQGTILRYRKMPEMEQCRKMLNQMSFMRERIQKLSEQVKKMRKSNGEKELTLIIKIEAMKMEEPPNEIQIQGEGQAQVDMEINITTLQKQQNFMELMNSDGDETLPFGEADLYNAWPGPFFF 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi06g0265 185 SUPERFAMILY SRF-like 3 95 IPR036879 GO:0003677|GO:0046983
Mibi06g0265 185 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Mibi06g0265 185 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Mibi06g0265 185 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Mibi06g0265 185 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mibi06g0265 185 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 50 IPR002100 GO:0003677|GO:0046983
Mibi06g0265 185 PANTHER MADS BOX PROTEIN 3 130 - -
Mibi06g0265 185 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Mibi06g0265 185 Gene3D - 13 96 IPR036879 GO:0003677|GO:0046983
Mibi06g0265 185 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Mibi06g0265 185 Coils Coil 80 107 - -
Mibi06g0265 185 FunFam Agamous-like MADS-box protein AGL80 13 98 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi06g0265 Mibi-ChrMibi06 8768177 8768835 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi06g0265 1 117 Type I MADS-box Gene Family AT5G48670 50.427 2.21e-33 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mibi06g0265 SRF-TF 4.2e-16 No_clan