Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi06g0238 ATGGAACAGTCGAAATTGTCTGCAGAATTTCCCTACAAGGAGATATCAGCCAGATGGGATCCAGGTGAAGCATGCTTGCCTTTAATTGATGAAGCACCTGTCTTTTATCCGACGGCTGAGGAGTTTGGGGACACCCTTGGTTACATAGCAAAAGTACGACCCCTGGCTGAACCCTATGGCATATGTAGGATAGTCCCTCCATCTTGCTGGGCTCCACCCTGCCCTCTTAAGGAGAAAGATGTTTGGGAGAATACTAAATTTCCCACCCGCATTCAGCAGATTGACTTGCTTCAGAATAGAGAGCCCATGAGAAAGAAAAGCCGGGGAAGGAAACGAAAGCGTAGAAAGAACTCTAAAATGACGACCTGTCGGCGACATGCTAATCCTGATTCAGACATTAATGCTGCTTCTGAATCTGATGAGAAATTTGGGTTCCAATCGGGACCAGACTTCACACTTAAAGACTTTCAACGATATGCAGCTTTCTTTAAGGAATGCTACTTTGAGGCAAAGGATATCAAGTGCGACGGACAAGTCAGTGATAATAATTATCAGAAAAGGTGGGAGCCTTCTGTGAAGGAAATTGAAGGTGAATACTGGCGAATAATTGAGCAACCAACTGATGAGGTCGAGGTGTATTATGGAGCCGACCTAGAAACTGGGGCACTCGGAAGTGGTTTTCCAAAGGCAGATTCCTTAACTAAGAGCGAGGTGGATGAGTATAAACTATCTGGCTGGAATCTTAATAACTTCCCACGGCTTCCTGGTTCTGTGCTATGTTTTGAAGGGAGTGATATCTCAGGAGTTCTAGTGCCTTGGCTCTATGTTGGCATGTGTTTTTCATCATTTTGCTGGCATGTTGAGGATCATCACCTTTATTCACTAAATTATTTGCACTGGGGTGATCCAAAAGTATGGTATGGAGTACCTGGCAACCATGCTACAGCTTTGGAGGGGGCAATGAGAAAGCATATGCCTGACTTGTTTGAGGAGCAACCTAATTTACTCAATGAACTGGTCACTCAACTGTCACCTTCAATTCTTAAATCTGAGGGAGTGCCTATATTTCGCACTGTCCAGCATTCTGGGGAATTTGTAATTACCTTTCCAAGAGCTTATCATGCTGGCTTCAATTGTGGTTTCAACTGTGCGGAGGCTGTGAATGTTGCTCCTGTAGATTGGTTACTGCATGGCCAGAATGCTGTTGAACTTTATAGCAAACAGCGCCGTAAAACATCATTGTCACATGACAAGCTGTTATTAGGATCAGCTCAGGAAGCTATAAAGGCCCTTTCAGATGTCTTTTTCGATGGAAATGACACTCCAAAAAATTTGATATGGAAAAGTGTCTGTGGGAAAGATGGTGTTCTTACGAATGCAATTAAGGCGAGGATAAAGATTGAGGAAGAGAGGATACAACGTCTTCGATCTCCCATAAAATTGGTGAAAATGGATTTCAACTTTGATTTGGATAAGGAAAGAGAATGCTTTGCTTGCTTCTATGATTTGCACCTTTCTGCTGTAGGTTGCCAATGCTCTGTTGATAAATACTCTTGTCTAAGACACTCAAATTCGCTTGGCTCATGTGAATGTGATGAAAGACTTGTTCTAATGCGTTATACCATAGAGGAGCTAAACGAGTTGGTTAGAGCATTAGAAGGAGAGTTGGGACCTATCAAGGTTTGGACAAATAGAGCCTCTGGAATTGTTTCTGTCGATGGTGGGGACGTTTGTTTAGATAAGCCATATGTGGGCAGAGACATATGCAAAACTAAGATCAATGGAGTGGAAAGTTCATCTTCTTGTGAAAGAATCAAGAAGTCAAAATTAAATGAAGAACCTCATAGTCATGTTTCTTCAGAATTAGTCCAGTCAGATTCTCAAGTGGAAAGTGCACCACAGAACATAGTAGATAGTCATAATGACAATGTTGATGCCAAAAATTTGGTCATGGATAATGAAATTAAGATTTCATGGAATTGTCATTTGGGTTTAAATCTTAATGTTGTGTCTGGTCAAAATGAAAGTTATGTCCTGCATGTTGCTGATGGCAAATCAAACAAGGGTATTGGTTGTGTTGAAAAAGCTTGTTACCCAGACCCGCAAAAGGAACAAGATGATGTGGTACTTGATGGTGAAGGAAATATATCAGACAGGTTTTCTCCTGTGAAGAAAGAGTACCCGTCATGTTCTAGGGATGATCTCACTTCTGGTAAATCTGACGGCGGCAAGATGTCTGGGGATGATGTATTAATGCATCAGGATTTGAGAGTGCTACCTACCAGTGAATGTAAAATGGAAGCAATAGACAGTTTCGATAAAAGCGCATCGTTGGTGATCCAAAGCTTTCTAATTGAGAAGTTTGCTTCATCTGTTGAGCCTATAAGCCTGGGCTTCATTGTGCATGGAAAGCTGTGGTGCAGTAAGCACATGTTATATCCAAAAGGATTCAAGAGTCGTGTCAAGTTCTTTAGCATGCTTGATCCATCAAGTGTCTGTAGCTATGTTTCTGAAGTTCTTGATGGTGGCTTAATTGGACCTCTTTTCAAGGTTAGCATGGAAGAATGTCCAAGTGCATCTTTCATGAATGTGTCAGCAGAGAAGTGCTGGGAATCAGTTCTGGAGAGTGTAAATGGTGAGATCATCAGGCGCAGAAAGCTCGGGGAAATAAAACTTCCTCCGCTGGAGCTTCTGCAAAGCATTGATGGTTTAAAAATGTTTGGATTCCTTTCTCCATCAATTATCCAGGGTATTGAAGCTTTGGATCCCACTCATCAATGCCTAGAGTACTGGAATCACAAGGAATCAATCTCTTCTCTATCTTTCAGCAGTACAAGTGATGGCATTAAGCTTGCATGCGGCAGCTCAAGCAGCCTGTCTGATGATGTGGCGACCATAGTTTTCGGCATCGATTTGACAAAGGATGAAAATGGTAATAAACTTATAGGGGTGAAACATGACTCGTTCGAAGGGATGAAGCTCGTACTTGAAGGATTGTTGAAGAAAGCGAGTGTGGATGAGTTGGTCACAATGCAGAAGTTGTTGGGGTCTGACATGGAAAGTTCTCAGTGGAGGGTGGAAGCGGCGGCTCTGATAGACAAGATCCAGAAAAGCATGTAG 3120 0.4237 MEQSKLSAEFPYKEISARWDPGEACLPLIDEAPVFYPTAEEFGDTLGYIAKVRPLAEPYGICRIVPPSCWAPPCPLKEKDVWENTKFPTRIQQIDLLQNREPMRKKSRGRKRKRRKNSKMTTCRRHANPDSDINAASESDEKFGFQSGPDFTLKDFQRYAAFFKECYFEAKDIKCDGQVSDNNYQKRWEPSVKEIEGEYWRIIEQPTDEVEVYYGADLETGALGSGFPKADSLTKSEVDEYKLSGWNLNNFPRLPGSVLCFEGSDISGVLVPWLYVGMCFSSFCWHVEDHHLYSLNYLHWGDPKVWYGVPGNHATALEGAMRKHMPDLFEEQPNLLNELVTQLSPSILKSEGVPIFRTVQHSGEFVITFPRAYHAGFNCGFNCAEAVNVAPVDWLLHGQNAVELYSKQRRKTSLSHDKLLLGSAQEAIKALSDVFFDGNDTPKNLIWKSVCGKDGVLTNAIKARIKIEEERIQRLRSPIKLVKMDFNFDLDKERECFACFYDLHLSAVGCQCSVDKYSCLRHSNSLGSCECDERLVLMRYTIEELNELVRALEGELGPIKVWTNRASGIVSVDGGDVCLDKPYVGRDICKTKINGVESSSSCERIKKSKLNEEPHSHVSSELVQSDSQVESAPQNIVDSHNDNVDAKNLVMDNEIKISWNCHLGLNLNVVSGQNESYVLHVADGKSNKGIGCVEKACYPDPQKEQDDVVLDGEGNISDRFSPVKKEYPSCSRDDLTSGKSDGGKMSGDDVLMHQDLRVLPTSECKMEAIDSFDKSASLVIQSFLIEKFASSVEPISLGFIVHGKLWCSKHMLYPKGFKSRVKFFSMLDPSSVCSYVSEVLDGGLIGPLFKVSMEECPSASFMNVSAEKCWESVLESVNGEIIRRRKLGEIKLPPLELLQSIDGLKMFGFLSPSIIQGIEALDPTHQCLEYWNHKESISSLSFSSTSDGIKLACGSSSSLSDDVATIVFGIDLTKDENGNKLIGVKHDSFEGMKLVLEGLLKKASVDELVTMQKLLGSDMESSQWRVEAAALIDKIQKSM 1039
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi06g0238 1039 Pfam jmjN domain 33 66 IPR003349 -
Mibi06g0238 1039 Gene3D Cupin 17 390 - -
Mibi06g0238 1039 MobiDBLite consensus disorder prediction 104 122 - -
Mibi06g0238 1039 Pfam F/Y rich C-terminus 846 933 IPR003889 GO:0005634
Mibi06g0238 1039 PANTHER LYSINE-SPECIFIC DEMETHYLASE 28 749 - -
Mibi06g0238 1039 MobiDBLite consensus disorder prediction 726 746 - -
Mibi06g0238 1039 SMART fyrn_3 798 842 IPR003888 GO:0005634
Mibi06g0238 1039 ProSiteProfiles FYR domain FYRC motif profile. 844 934 IPR003889 GO:0005634
Mibi06g0238 1039 Pfam F/Y-rich N-terminus 795 839 IPR003888 GO:0005634
Mibi06g0238 1039 MobiDBLite consensus disorder prediction 98 140 - -
Mibi06g0238 1039 Pfam JmjC domain, hydroxylase 273 389 IPR003347 -
Mibi06g0238 1039 SMART fyrc_3 848 940 IPR003889 GO:0005634
Mibi06g0238 1039 Gene3D - 790 928 - -
Mibi06g0238 1039 Pfam C5HC2 zinc finger 496 548 IPR004198 -
Mibi06g0238 1039 SUPERFAMILY Clavaminate synthase-like 237 427 - -
Mibi06g0238 1039 FunFam Putative lysine-specific demethylase JMJ16 790 928 - -
Mibi06g0238 1039 ProSiteProfiles FYR domain FYRN motif profile. 784 842 IPR003888 GO:0005634
Mibi06g0238 1039 ProSiteProfiles JmjN domain profile. 32 73 IPR003349 -
Mibi06g0238 1039 SMART cupin_9 240 406 IPR003347 -
Mibi06g0238 1039 ProSiteProfiles JmjC domain profile. 240 406 IPR003347 -
Mibi06g0238 1039 SMART JmjN_1 31 72 IPR003349 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi06g0238 Mibi-ChrMibi06 7856871 7863538 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi06g0238 786 972 JUMONJI Transcription Factor Family AT1G30810 50.267 4.03e-51 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Mibi06g0238 JmjC 1.4e-45 CL0029