Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi06g0227 ATGCCAAGAAACTGTTTAGGTGCCTGTTTGTTTAAGATTAACGAAAGTTCTGATTTTGGTTATGAGTGTATCTCCTCTTGCACCCCAAAGATAAGCTTTGCCAAAGCATCCTTCCTTCAAATCCTCTTCACTTTGATCCCCACAAAGCTCGTAATGGGGGCCCCTAAGCAGAAGTGGACACAAGAAGAAGAAGCAGCACTAAAAGCTGGAGTTGTTAAGCATGGGGTTGGAAAATGGCGCACCATACTTAAGGATCCGGAGTTTAGTAATGTCTTGTATCTGCGGTCCAATGTAGATCTTAAGGATAAATGGAGAAATCTGAGCGTAATGGCAAATGGATGGAGCTCTCGGGAAAAGTCTAGATTAGCTGTTAGAAGGACACATCAGGTCCCAAAACAAGATGAAAGTGCTATGAATACCCCTTCTGCTCCGAGTGATGAAGAACTTATGGACGCCAGGGCTCCTCAAGTTCCTAGAGATATGCCGCAGATTCCTGCTCCAAAGAGGTCTATTTTAAGATTGGATAACCTTATAATGGAAGCAATAGCTAGTTTGAGGGAGCCTGGTGGTTCCAACAAGACAAATATTTCAGCGTACATAGAGGACCAATATGGGGCACCTCCAGATTTCAGGAGGTTGTTGTCAACAAAACTGAAATCATTGACAGCAAGTGGAAAACTGATTAAGGTGAAACGAAAATATAGAATTCCTCCTGTCCCAACATACCCAGACCGGAGAAGAAACTCATCCTCGTTATTGTCAGATGCAAGGCAGAGAATTTCTATGAAGCTAGACAAGGATGAGGCCAATGTTATCACGAAGTCTCAGATAGATTTGGAACTAGCAAAGATAAGGTCAATGACAACACAAGAGGCAGCTGCAGTTGCTGCTCGAGCAGTTGCAGAAGCAGAAGCTGCCATAGCAGAAGCGGAAGAAGCAGCAAAGGAAGCAGAGGCTGCTGAAGCTGATGCAGAGGCAGCACAAGCTTTTGCAGATGCTGCAATGAAGACACTAAATGGAAGAAACACCCCAAAATTGAGGCAGTCCATAGAGCTGATGCGAGCATGA 1068 0.4438 MPRNCLGACLFKINESSDFGYECISSCTPKISFAKASFLQILFTLIPTKLVMGAPKQKWTQEEEAALKAGVVKHGVGKWRTILKDPEFSNVLYLRSNVDLKDKWRNLSVMANGWSSREKSRLAVRRTHQVPKQDESAMNTPSAPSDEELMDARAPQVPRDMPQIPAPKRSILRLDNLIMEAIASLREPGGSNKTNISAYIEDQYGAPPDFRRLLSTKLKSLTASGKLIKVKRKYRIPPVPTYPDRRRNSSSLLSDARQRISMKLDKDEANVITKSQIDLELAKIRSMTTQEAAAVAARAVAEAEAAIAEAEEAAKEAEAAEADAEAAQAFADAAMKTLNGRNTPKLRQSIELMRA 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi06g0227 355 SMART sant 55 110 IPR001005 -
Mibi06g0227 355 CDD SANT_TRF 57 107 - -
Mibi06g0227 355 Pfam linker histone H1 and H5 family 175 231 IPR005818 GO:0000786|GO:0003677|GO:0006334
Mibi06g0227 355 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 56 84 IPR017930 -
Mibi06g0227 355 FunFam Telomere repeat-binding factor 1 53 109 - -
Mibi06g0227 355 PANTHER SINGLE MYB HISTONE 4 52 342 IPR044597 GO:0003691
Mibi06g0227 355 ProSiteProfiles Myb-like domain profile. 56 108 IPR001005 -
Mibi06g0227 355 SMART h15plus2 168 233 IPR005818 GO:0000786|GO:0003677|GO:0006334
Mibi06g0227 355 Coils Coil 293 330 - -
Mibi06g0227 355 FunFam Telomere repeat-binding factor 1 168 248 - -
Mibi06g0227 355 Gene3D - 168 245 IPR036388 -
Mibi06g0227 355 Gene3D - 53 110 - -
Mibi06g0227 355 MobiDBLite consensus disorder prediction 120 149 - -
Mibi06g0227 355 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 170 238 IPR005818 GO:0000786|GO:0003677|GO:0006334
Mibi06g0227 355 SUPERFAMILY Homeodomain-like 53 122 IPR009057 -
Mibi06g0227 355 SUPERFAMILY "Winged helix" DNA-binding domain 167 247 IPR036390 -
Mibi06g0227 355 Pfam Myb-like DNA-binding domain 56 107 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi06g0227 Mibi-ChrMibi06 7582567 7589231 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi06g0227 52 346 Single Myb Histone (SMH) Gene Family AT1G49950 67.442 6.69e-103 303
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Mibi06g0227 Linker_histone 6.8e-08 CL0123