Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi06g0077 ATGGGACCAACAAAGTCCCTCATCCCTCCTTTCCTCGTTCTCTTCCTCTTCCTCAATATATACCCTTCTTCACAAAATCCGTCACCTTCCACCGTCTCCGGCGACCGCCACCACCGATCATTACGAACACTCGAAGCTCTCAAAGCTTCTATTGCTTCACCATCACCCTCACCGTCGGGTTCGATTAGGCCACGGGTGTACCTAGCGACGTCGTATGGGGCGGATCCGACGGGGAAGGTGGACAGTACGGATGCTCTACTTGCGGCCATGGCAGATGTGGCGAATGGTTACAGTGAAGGGGTCTTAATTGATGGCATTGCTAATCTTGGTGGCGCACAGCTTTATCTTCAGGGTGGTAACTACTTGATTAGTCGCCCGCTCCGACTTCCGGCTGCCGGCGTCGGAAACTTATTGATACACGGTGGGACCATAAGAGCCTCAGATAGCTTTCCATCAGACGGGTACCTCATTGATTTATCAACCACTAGAAATGACAAAACTACCCCTACATCATCCTACAATTACGAGTTTATAACCTTCAAGGACCTCCTCTTAGACTCCAACTTCCATGGAGGAGGCATCTCCATCATAAACTCCCTCAGAATCTCCATAGACAATTGCTACATCACTCACTTCACCACCAACGGCATCCTCGTCCAATCCGGCCACGAAACCTACGTCCGAAACTCCTTCATCGGTCAACACATCACAGCCGGCGGCGACAAAGGCGAAAGAAACTTCACCGGCACCGGAATTAACCTCCAAGGAAACGACAATTCTATCACCGATGTTGTCATCTTCTCCGCCAACATCGGTATCATGGTCTCCGGTCAAGCCAACATAATCTCCGGCGTACATTGCTACAATAAAGCCACCGGCTTCGGTGGCACCGGCATTTATCTCAAACTCGCCGGGCTAACACAAACTAGAGTTCTTAATTCTTACATGGATTACACAAGTATTGTTGCGGAAGATCCAGTTCAACTTCATGTGTCTGGTACGTTCTTCCTAGGTGATGCCAATGTTGTATTAAAGTCGGTCAACGGTGTGGTCAACGGGGTCAACATAGTGGACAACATATTTTCTGGGTCAAACAATGGGGTAGAAATTGTTCATTTGGATGAATCAAGTGGTAATAGTTTCAAGAAAGCTGATGGGGTTGTGGTGGATAGGAATGCTGTGATGGGGATGAAGTTGAAGAGTACTGTGGCAAAGAAGACATTGCAAGTGAATAATGGGAGTTCATTAATGGTGGATTTTAATGATATTTTGGTTTTTCCTAACCTTATAAGACATGTCCACTATTCATTGAGCTTTGAAGGTGACACTTTCCCAAGTCATGTTCTACGGAATGTGTCGGATAATCGTGTGGTGATCCAAACAAGTGAAGCACTTCCTGCAAGTTTATATGTTTCTGTGGATCAATGTATATGA 1434 0.4679 MGPTKSLIPPFLVLFLFLNIYPSSQNPSPSTVSGDRHHRSLRTLEALKASIASPSPSPSGSIRPRVYLATSYGADPTGKVDSTDALLAAMADVANGYSEGVLIDGIANLGGAQLYLQGGNYLISRPLRLPAAGVGNLLIHGGTIRASDSFPSDGYLIDLSTTRNDKTTPTSSYNYEFITFKDLLLDSNFHGGGISIINSLRISIDNCYITHFTTNGILVQSGHETYVRNSFIGQHITAGGDKGERNFTGTGINLQGNDNSITDVVIFSANIGIMVSGQANIISGVHCYNKATGFGGTGIYLKLAGLTQTRVLNSYMDYTSIVAEDPVQLHVSGTFFLGDANVVLKSVNGVVNGVNIVDNIFSGSNNGVEIVHLDESSGNSFKKADGVVVDRNAVMGMKLKSTVAKKTLQVNNGSSLMVDFNDILVFPNLIRHVHYSLSFEGDTFPSHVLRNVSDNRVVIQTSEALPASLYVSVDQCI 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi06g0077 477 Pfam Pectate lyase superfamily protein 70 293 IPR024535 -
Mibi06g0077 477 Gene3D - 69 468 IPR012334 -
Mibi06g0077 477 PANTHER POLYGALACTURONASE QRT3 37 475 IPR039279 GO:0004650
Mibi06g0077 477 FunFam Polygalacturonase QRT3 69 470 - -
Mibi06g0077 477 SMART pbh1 256 277 IPR006626 -
Mibi06g0077 477 SMART pbh1 351 372 IPR006626 -
Mibi06g0077 477 SMART pbh1 199 221 IPR006626 -
Mibi06g0077 477 SMART pbh1 134 159 IPR006626 -
Mibi06g0077 477 SUPERFAMILY Pectin lyase-like 57 380 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi06g0077 Mibi-ChrMibi06 1119138 1122006 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi06g0077 06 1119138 1122006 Mibi06g0077 06 1119138 1122006 ECH