Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi05g2615 ATGCAAGGAGGCGCAGCCGACGGCGAAGCGGTGGACTTCGAGCCAGAGGACGATGACTTGATGGACGAAGATGGCGGCGCAGAAGCCGACGCCTCTGCTTCTCCGCACGCTCCTCCTCTTCCCAAGCTCAAATCCGCCATTACTGGCGGCGCTTCTTCCTCTCTCCCTAAGAAAACCAAAGGCAGAGGCTTTCGTCAGGAAACTAACGATGCCAATCGTAACACTGGCCTTTCTGGTTCTGATTTTGATTCCCTCGCCACTGAGGGTGGGCCCGGCCCTCAACGATCAATCGAAGGATGGATTATTCTGGTCACAGGAGTGCATGAGGAAGCACAGGAAGATGATCTACAAAATGCATTTGGTGAATATGGAGAAATTAAGAATCTACATTTAAATCTTGATCGTCGCACTGGTTTTGTCAAAGGTTATGCATTGATTGAATATGAGCATGCTGAAGAAGCCCGAAATGCAATAGAGAACTTGAATGGATCAGAACTTGTTACCCAAACTATTTATGTTGACTGGGCTTTCAGCAGTGGACCTATAAATGGGGCGATGAGAAGAAAGAATGCTAGGCCAACACGGGAACGACGCTCGAGGAGTCCTCGGAAGAGATATTGA 621 0.4911 MQGGAADGEAVDFEPEDDDLMDEDGGAEADASASPHAPPLPKLKSAITGGASSSLPKKTKGRGFRQETNDANRNTGLSGSDFDSLATEGGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGEYGEIKNLHLNLDRRTGFVKGYALIEYEHAEEARNAIENLNGSELVTQTIYVDWAFSSGPINGAMRRKNARPTRERRSRSPRKRY 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi05g2615 206 MobiDBLite consensus disorder prediction 191 206 - -
Mibi05g2615 206 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 100 178 IPR000504 GO:0003723
Mibi05g2615 206 PANTHER RNA-BINDING PROTEIN 8A 7 205 IPR008111 GO:0003723|GO:0005634|GO:0005737|GO:0006396
Mibi05g2615 206 MobiDBLite consensus disorder prediction 68 82 - -
Mibi05g2615 206 FunFam RNA-binding protein 8A-like 31 197 - -
Mibi05g2615 206 Gene3D - 50 192 IPR012677 -
Mibi05g2615 206 MobiDBLite consensus disorder prediction 1 93 - -
Mibi05g2615 206 SUPERFAMILY RNA-binding domain, RBD 93 202 IPR035979 GO:0003676
Mibi05g2615 206 SMART rrm1_1 101 174 IPR000504 GO:0003723
Mibi05g2615 206 PRINTS RNA binding motif protein 8 family signature 147 163 IPR008111 GO:0003723|GO:0005634|GO:0005737|GO:0006396
Mibi05g2615 206 PRINTS RNA binding motif protein 8 family signature 91 105 IPR008111 GO:0003723|GO:0005634|GO:0005737|GO:0006396
Mibi05g2615 206 PRINTS RNA binding motif protein 8 family signature 165 177 IPR008111 GO:0003723|GO:0005634|GO:0005737|GO:0006396
Mibi05g2615 206 PRINTS RNA binding motif protein 8 family signature 53 65 IPR008111 GO:0003723|GO:0005634|GO:0005737|GO:0006396
Mibi05g2615 206 MobiDBLite consensus disorder prediction 184 206 - -
Mibi05g2615 206 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 102 170 IPR000504 GO:0003723
Mibi05g2615 206 MobiDBLite consensus disorder prediction 10 26 - -
Mibi05g2615 206 CDD RRM_RBM8 94 181 IPR033744 GO:0003729
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi05g2615 Mibi-ChrMibi05 50367598 50372198 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi05g2615 102 176 Eukaryotic Initiation Factors Gene Family AT3G11400 29.333 7.63e-09 52.8