Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi05g2563 ATGGGAAGGGCCAGAGAAATTCTTCGACTCTATTCTTCTCTTCGCTTTATAACCACGAGATCACCACCTTCCACTTTCTCTACTCGTTTTATCATTCCCTCCAGCCATTCTTTCTCCTCAAACTCTTGTGATGAGGACGACAAGAAATCACCCAAGTCTCAGAGGGACTCGTTGCTTCTAGAAAAATTTAGACTTAGAAAACTCAAAGGTTCTCCCACAACTTCACAAAGTAGCCCCCAAGCATCATGTTCTACTTCAGAGAAGGTAGTTGAGAAGGGTTTGAAGAATGATGATGAAAACTCTAAGGTAGTGACCAGTTTTAAGGAGTTGGGTTTGTGTGATGAGCTTATTAAGGTTATGGAGAAATTGGGGCTGCATGTTCCTACTGAGATTCAGTGTGTAGGAATTCCTGCTGTTTTGGAAGGGAAGAATTTGTTGATGAGTTCTGTCTCTGAGCCTGATAGGATTTTGGCCTACTTGTTGCCTCTTATTCAGCTTTTAAGACAAGACACAAAGTTGTCCCATTCAAATTGGCGGCATCCTCAGGCCATTGTGCTCTGTGCCACAGAGGAGAAAGCTGAACAGTGCTTTAATGCTGCACAATATATCATCCATGACGCAGAATTGAAATCTACAAAGGACGCTTCACCAAATAATGAGAAGTCAGATGTTTCAATTGGCCTAGCAATCGGACATCCCAGTGAGATTCTTCAGTACATTGAAGAGGGAACAGTTATTCCTGAAGAAATAAGATATTTGGTAATAGATGATGTAGACTGCATGTTTGATAGTGGCCTCGGCCTTGAAGTTCGCAAGATTCTCAGACACTTATCGGATTATGCTTCAGAATACACTACCAAAGGATGGCAAACTGTTTTAGTTGCTTCAACAATAACAGAGGTCTTGGGTGAAGAATCTCCTGTTATAAAGCGCCTGGAGAATAATCATTCTGGACATGTTTCTGCAATGCTGTTAGAAATGGATCATGCAGAAATCTCTCAACTAACAGAATCCTTGGATGCTTTAAGGCAAAAGATGACAGAGGCCATGAATTCCTTTCTTAAATGA 1068 0.4129 MGRAREILRLYSSLRFITTRSPPSTFSTRFIIPSSHSFSSNSCDEDDKKSPKSQRDSLLLEKFRLRKLKGSPTTSQSSPQASCSTSEKVVEKGLKNDDENSKVVTSFKELGLCDELIKVMEKLGLHVPTEIQCVGIPAVLEGKNLLMSSVSEPDRILAYLLPLIQLLRQDTKLSHSNWRHPQAIVLCATEEKAEQCFNAAQYIIHDAELKSTKDASPNNEKSDVSIGLAIGHPSEILQYIEEGTVIPEEIRYLVIDDVDCMFDSGLGLEVRKILRHLSDYASEYTTKGWQTVLVASTITEVLGEESPVIKRLENNHSGHVSAMLLEMDHAEISQLTESLDALRQKMTEAMNSFLK 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi05g2563 355 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 40 300 - -
Mibi05g2563 355 Pfam Poly-adenylate binding protein, unique domain 307 351 IPR002004 GO:0003723
Mibi05g2563 355 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 101 301 IPR027417 -
Mibi05g2563 355 SUPERFAMILY PABC (PABP) domain 300 351 IPR036053 GO:0003723
Mibi05g2563 355 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 105 133 IPR014014 GO:0003724
Mibi05g2563 355 Coils Coil 325 352 - -
Mibi05g2563 355 Gene3D - 304 354 - -
Mibi05g2563 355 Gene3D - 62 303 IPR027417 -
Mibi05g2563 355 MobiDBLite consensus disorder prediction 69 89 - -
Mibi05g2563 355 MobiDBLite consensus disorder prediction 69 94 - -
Mibi05g2563 355 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 136 316 IPR014001 -
Mibi05g2563 355 SMART poly_2 294 353 IPR002004 GO:0003723
Mibi05g2563 355 Pfam DEAD/DEAH box helicase 129 299 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi05g2563 Mibi-ChrMibi05 49020559 49023470 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi05g2563 104 277 Eukaryotic Initiation Factors Gene Family AT3G19760 20.670 5.03e-08 52.4