Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi05g2538 ATGGCTCGAGGAAGAAAACGACTAAAGAAGAACGATGAATCGGCTCCATTTATGGCTAAGGAGCTAGCTGGTGATGAAGAAGATGGTGTGGGACATAAGGAATGTTCAAAGGTTCGAACTTTGACAGAAGATGAGGGATTAAAGCCTGAAAGTTTCAATCTTGAAGCTCAACAAGAGAAAATGGAACCTTTAAAGAAAGGCACTGAGAGTAACAAGAAGAAACGAGGTAGAAAGCCTAAGTCTGAGGTTATGGCATTAGGGAACGAGGTTTTAGCAGAAGGCACTAAGCGTAGTGTTAGAGTATCGCAGAAAGGTTTCTACTTTGGATTTTTTAAGGACAAAGATGATGGAGAAGAACCTAAACGAAGTAAAAAAAGAAGGGGAAGTGGTAAAAAGGCAAAACTTTCTGCAAATAAATTGCCAGTGATCCATGAAGTAGAAAGCAGAGATAAGAAGATTTCAAAGCGTAAGAAGGCAGAACATGAAGCATCAGAGGCTAATGGATCAACGAGAAAGGCTAGAGATTCTTCTTCAAAAATAAGATCAACTAAAGGTTATAGTTTGAGGGCATCTGAATCTGAAGTTAATAAGCAGGAGACGTTCAAACTAAACAAGCGCGATCCTGAATGGATCGCAAATGTGTCCTTAATGTGCCATCAGTGTCAGAGAAATGATAAGGGGGCGGTTGTAAGGTGTACAAAATGTAACCGGAAAAGATTTTGCATCCCGTGTATTAAGAATTGGTACCCTCAATTTAGAGAGGAAGATATTGCTGAGGAGTGTCCAGTGTGTCGTGGAAACTGCAATTGCAAAGCATGTCTGCGCTCTGCTAAATTAATTGAAGCAATGAAGGGAGAAAAAACGATTGGAGCAAAAAAGGAGGAATCAGAAAAGGAGGAAACAAAAAATGTCCCAACAGTTGAGGAAGTTGAATGCAGCAAGTATTTGCTACCAGTGCTTCTTCCATATTTAAGGCAGTTGCATGAAGAACAAATGATCGAGAAGGAGATTGAAGCTAAGAGACAAGGCATCTCACTTTCTGAGCTTCAGGTAGAAAGGGCAGATTGCACAGATAAGGAGCGTGTTTACTGTGACAATTGTAAAACTTCAATTTTTGATTGTCACCGAAGCTGTAAAGAATGTTGTTTAGACCTCTGTCTTGTCTGTTGCCGTGAGATTCGTCAGGGGCAATTGGTTGGAGGTGCAGAGCCAGTTGAGTATAAGTTTATCAGCTTGGGGCTACAATATATGCATGGTGAGGCTGGAAAGCAAACAAAAACTGATCCTAATATTGAGACAGAGACTGAGAATCGTGATTGGTTAAGATCTGATTTGAAGGTGACAAGTGATGGTAGCATCCCTTGTCCCAGGGTTCATGGTGGTTGTGGTAGTAGTTATCTTGAACTTCGATGTATATTTCCTGAAAATGGGGTTTCTGAACTTTTAAAGAAAGCAGAAAATATGGCCAAACTGTATAAGCTTGATGCTGTGACACCAACAAGTAACCAGTGGTGTTCATGTTTTGACCAAGATGCTACCAACAATGTTGGAAATGAGAATAGGAGGAAAGCTGCTTCTCGTGAAGATCCCAATGTTAATGACAACTATATATACTGTCCAAGGGCTGCAGATTTAGGACCATCGGATCTGAAGCATTTTCAGTGTCACTGGAGTAGAGGAGAGCCAGTGATTGTCAGCAATGTGCTTGAATGTACATCTGGTTTAAGCTGGGAACCACTTGTCATGTGGCGTGCATTCCGTCAGATGACTAAAACCAAGCATGTTCAACATTTGGATGTGAAGGTCCTTGATTGCTTGGATTGGTGTGAGGGAGACATCAACATCCACCAATTCTTTACAGGGTACTCGGAAGGTCGAAAAGATTTCTCTAAGTGGCCTCAGTTATTGAAGTTGAAAGATTGGCCTCCTTCTAATTTATTTGAGGAACGATTACCACGTCATTGTGCCGAGTTCATTTCTTCCTTACCATACAAGGAATATACAAATCCTCTTAAGGGTGGTGTTCTAAATCTTTATTCCATGTTGCCTGAAAGCACTATAAAGCCGGATATTGGTCCGAAGACATATATAGCTTATGGAATTCCTATGGAGCTTGGGAGGGGCGATTCAGTGACAAAGCTTCATTGTGATATGTCTGATGCAGTGAATGTTTTGACTCATACTTTTAAGATTCCCCTTGATGCTGATCTCCTTGCGACAATAGAGGGTTTGAAGAAAAAGCACTTTGAACAAGATATAAAGGAACTGAAATTCTATAGTCAGGATGTAGAAGCTAATGTTGAAAATGGAAAAATTACAGATTCTGAAAGTAAGTTGCTTGGATATGATTCTGTTGAGGGAGGTGCTCTCTGGGATATTTTTAGGAGACAGGATGTGCCTAAACTACAGGAATACCTTAAAAAGCACTTCGGAGAATTCAGGCATGTCAACTGTATTCCATTGGAGAAGGTTGTTCATCCTATCCATGATCAGACCTTTTACTTGACTGTGGACCATAAGAGAAAGCTAAAGGAGGAATATGGAATTGAACCGTGGACATTTGTTCAGAAACTGGGAGATGCAGTTTTGATTCCTGCTGGTTGTCCTCACCAAGTCAGAAATCTCAAGTCATGTACCAAGGTTGCTCTCGATTTTGTGTCGCCTGAAAGTATAGAGGAGTGTTTTCGTTTAACACAGGAATTTCGCACACTTCCCATAAATCACAGGGCTATTGAGGACAAATTGGAGGTCAAAAAGATCCTCATTCATGCAGTGAGTAAGGTAGTGAAGAACTTGGAGATAGTAAGGGAGCAAGCAAGCTAA 2823 0.4081 MARGRKRLKKNDESAPFMAKELAGDEEDGVGHKECSKVRTLTEDEGLKPESFNLEAQQEKMEPLKKGTESNKKKRGRKPKSEVMALGNEVLAEGTKRSVRVSQKGFYFGFFKDKDDGEEPKRSKKRRGSGKKAKLSANKLPVIHEVESRDKKISKRKKAEHEASEANGSTRKARDSSSKIRSTKGYSLRASESEVNKQETFKLNKRDPEWIANVSLMCHQCQRNDKGAVVRCTKCNRKRFCIPCIKNWYPQFREEDIAEECPVCRGNCNCKACLRSAKLIEAMKGEKTIGAKKEESEKEETKNVPTVEEVECSKYLLPVLLPYLRQLHEEQMIEKEIEAKRQGISLSELQVERADCTDKERVYCDNCKTSIFDCHRSCKECCLDLCLVCCREIRQGQLVGGAEPVEYKFISLGLQYMHGEAGKQTKTDPNIETETENRDWLRSDLKVTSDGSIPCPRVHGGCGSSYLELRCIFPENGVSELLKKAENMAKLYKLDAVTPTSNQWCSCFDQDATNNVGNENRRKAASREDPNVNDNYIYCPRAADLGPSDLKHFQCHWSRGEPVIVSNVLECTSGLSWEPLVMWRAFRQMTKTKHVQHLDVKVLDCLDWCEGDINIHQFFTGYSEGRKDFSKWPQLLKLKDWPPSNLFEERLPRHCAEFISSLPYKEYTNPLKGGVLNLYSMLPESTIKPDIGPKTYIAYGIPMELGRGDSVTKLHCDMSDAVNVLTHTFKIPLDADLLATIEGLKKKHFEQDIKELKFYSQDVEANVENGKITDSESKLLGYDSVEGGALWDIFRRQDVPKLQEYLKKHFGEFRHVNCIPLEKVVHPIHDQTFYLTVDHKRKLKEEYGIEPWTFVQKLGDAVLIPAGCPHQVRNLKSCTKVALDFVSPESIEECFRLTQEFRTLPINHRAIEDKLEVKKILIHAVSKVVKNLEIVREQAS 940
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi05g2538 940 FunFam Transcription factor jumonji domain-containing protein 534 911 - -
Mibi05g2538 940 MobiDBLite consensus disorder prediction 110 191 - -
Mibi05g2538 940 MobiDBLite consensus disorder prediction 1 50 - -
Mibi05g2538 940 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 44 935 IPR045109 GO:0032454|GO:0033169
Mibi05g2538 940 MobiDBLite consensus disorder prediction 1 86 - -
Mibi05g2538 940 SUPERFAMILY Clavaminate synthase-like 546 929 - -
Mibi05g2538 940 Pfam JmjC domain, hydroxylase 781 885 IPR003347 -
Mibi05g2538 940 MobiDBLite consensus disorder prediction 143 179 - -
Mibi05g2538 940 ProSiteProfiles JmjC domain profile. 671 902 IPR003347 -
Mibi05g2538 940 MobiDBLite consensus disorder prediction 110 124 - -
Mibi05g2538 940 SMART cupin_9 651 902 IPR003347 -
Mibi05g2538 940 Gene3D Cupin 540 911 - -
Mibi05g2538 940 ProSiteProfiles Zinc finger RING-type profile. 218 265 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi05g2538 Mibi-ChrMibi05 48327007 48340152 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Mibi05g2538 JmjC 2e-13 CL0029