Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi05g2506 ATGTCGAATCCAAAGCATCATCCTCAGTTTCTGACAGGCAATGTGGTCGATTCGTCCCTTCGGAATCACAGTGCGGAAATAGATGGAAAGTCCTCAATCCGAAGCCCTAAGTTCTATCCACCTGCGAACGCTCTCTATGAAGACATTGCTAGCAGTTCGGACCTTTTCCAGACAAACCTTCAGGATTTTCACAAATCATTTGGCACCAAATTAAAAGTTCCTACTATTGGAGGAAAACCACTAGATCTATATCACCTTTTTATTGAAGTTACTTCTCGTGGTGGGCTTGAAAAGGTAATTGGAGATCGTAAATGGAAGGAAGTGATTTCAGTCTTCAAATTCCCGAACTCCGTAACCAGCGCATCATTTGTATTGCGCAAATACTATCAATCTTTGCTTTATGATTTTGAGCAAGTTTATTACTTTCGTAAGCAAGCCCCTTCTTTTTCAATGCCTGATTTTAGCGGCAGGAGCACATTGAGCTCAAAGGAAGGTGCTACTTTGAATGATTTACAAGTTACTACGCTGGAGCAGCAGCTTGACTCTTTGGTGCCTGGTACTATCGACATGAAATTTGATGGTGGTTATGTAGTCACTGTGAATTTGGGTTCAGAGCAGCTGAAAGGTGTGCTGTATCATGTACCTCGCAATGTATCACAGAGTTCAGCATCCATACATGCTTCTCAGAATCGAAAGAAATCAAGGTTGGGTTCACATGATCCATCTCGGCCTAAATCAAACAGGAGTGGCTACAATTTCTTCTTTGCCGAACACTACGCTAGGCTAAAGCCTTCATATTTTGGGCAAGAGAGAGCAATTAGTAAGAAGATTGGGTATTTATGGAACAATCTCACTGAAGCAGAAAGACAGATTTATCAGGAGAAAGGAAGGAGAGATAAGGAGAGATACAGGTCTGAAATGGAGGAATACAAAGCATCCAATAATTTGACTCCTCAGTAG 960 0.4167 MSNPKHHPQFLTGNVVDSSLRNHSAEIDGKSSIRSPKFYPPANALYEDIASSSDLFQTNLQDFHKSFGTKLKVPTIGGKPLDLYHLFIEVTSRGGLEKVIGDRKWKEVISVFKFPNSVTSASFVLRKYYQSLLYDFEQVYYFRKQAPSFSMPDFSGRSTLSSKEGATLNDLQVTTLEQQLDSLVPGTIDMKFDGGYVVTVNLGSEQLKGVLYHVPRNVSQSSASIHASQNRKKSRLGSHDPSRPKSNRSGYNFFFAEHYARLKPSYFGQERAISKKIGYLWNNLTEAERQIYQEKGRRDKERYRSEMEEYKASNNLTPQ 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi05g2506 319 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 35 314 - -
Mibi05g2506 319 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 244 311 IPR009071 -
Mibi05g2506 319 ProSiteProfiles ARID domain profile. 50 141 IPR001606 GO:0003677
Mibi05g2506 319 MobiDBLite consensus disorder prediction 295 319 - -
Mibi05g2506 319 MobiDBLite consensus disorder prediction 295 309 - -
Mibi05g2506 319 CDD ARID_HMGB9-like 52 137 IPR045303 GO:0003677
Mibi05g2506 319 Pfam ARID/BRIGHT DNA binding domain 54 137 IPR001606 GO:0003677
Mibi05g2506 319 SUPERFAMILY ARID-like 50 149 IPR036431 GO:0003677
Mibi05g2506 319 SMART bright_3 51 142 IPR001606 GO:0003677
Mibi05g2506 319 CDD HMGB-UBF_HMG-box 244 308 - -
Mibi05g2506 319 Gene3D - 42 151 IPR036431 GO:0003677
Mibi05g2506 319 MobiDBLite consensus disorder prediction 221 249 - -
Mibi05g2506 319 Pfam HMG (high mobility group) box 244 311 IPR009071 -
Mibi05g2506 319 Gene3D High mobility group box domain 226 317 IPR036910 -
Mibi05g2506 319 SMART ARID_2 47 137 - -
Mibi05g2506 319 SUPERFAMILY HMG-box 232 313 IPR036910 -
Mibi05g2506 319 SMART hmgende2 243 312 IPR009071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi05g2506 Mibi-ChrMibi05 47004442 47016541 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi05g2506 44 314 ARID Transcription Factor Family AT3G13350 52.817 2.52e-95 283
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Mibi05g2506 ARID 1.8e-19 CL0123