Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi05g2505 ATGGGCTCCAGGAAGGGCGACAATTCTCACTCCGGCGATGGTGCCAGTCCTGGCAAAATCTTCATTGGAGGGCTAGCTAGAGATACAACACTCGAGCAATTTGTCAAGTATTTTGAGAAGTATGGGGAGATAACAGACTCGGTGATAATGAAAGATCGGCATACGGGTCGGCCTAGGGGTTTCGGTTTCATTACCTACGCAGATCCTTCTGTTGTTGACCATGTTATCCAGGAGGACCATGTCATCAATGGCAAGCAGGTGGAGATCAAAAGGACAATTCCAAAGGGCTCATCACAGGCTAATGATTTTAAAACTAAGAAGATATTTGTTGGTGGTATTCCAACCTCAGTAACCGAAGATGAATTGAAGAACTTCTTTTCATCATATGGAAAGGTTGTGGAGCATGAGATCATTCGTGATCATACTACCAAACGCTCTCGAGGATTTGGATTTATAGTGTTTGACAGTGAAAAAACTGTTGATAATTTGCTGGCAAATGGAAACATGATTGATATGGTCGGTACTCAGGTTGAGATCAAGAAGGCTGAACCCAAGAAAGCCTCAAACCCATCATCTTTTCCTCCATTTGGTAGTGATAGGGCACGCCCATACAGTGATGGTTATGGTGGATTTGGCGAATCCTATAGCAGTTTTGGCAGTGGCAGTTTTGGTCCTGCTTCTTATAGGTCACTTGGAGGTTTTGGCAGCAGGCTTGGTGATTATGGTGGGTATGGTGGTGATGAATTTGGTGATAGTTTTGGAGGCTATGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTTTTGCTGGCTATCGAGGTGATTCATCTTTTGGCTATTCTAGTCGCTATGGTTCATATATGGGGGGCCTTGGTGGTGGATATGGTGGAAGTGGGCTAGGGGCATACGGGCGAGGTGCTGGGGGCTTTGGAAGCTATGGTGGACCTGGTTCTGGCGGGGGTTATGACTCTGGCCCTGGTGCAGGCTATGGTGGGCCGGGGGCGCTGTATGGTAGTAGAGGAGGTTATGGAGGCAGTAGTCGTTACCACCCTTATGCAAGATAG 1059 0.4759 MGSRKGDNSHSGDGASPGKIFIGGLARDTTLEQFVKYFEKYGEITDSVIMKDRHTGRPRGFGFITYADPSVVDHVIQEDHVINGKQVEIKRTIPKGSSQANDFKTKKIFVGGIPTSVTEDELKNFFSSYGKVVEHEIIRDHTTKRSRGFGFIVFDSEKTVDNLLANGNMIDMVGTQVEIKKAEPKKASNPSSFPPFGSDRARPYSDGYGGFGESYSSFGSGSFGPASYRSLGGFGSRLGDYGGYGGDEFGDSFGGYGGGGGGGGGGFAGYRGDSSFGYSSRYGSYMGGLGGGYGGSGLGAYGRGAGGFGSYGGPGSGGGYDSGPGAGYGGPGALYGSRGGYGGSSRYHPYAR 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi05g2505 352 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 20 82 IPR000504 GO:0003723
Mibi05g2505 352 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 167 IPR000504 GO:0003723
Mibi05g2505 352 SUPERFAMILY RNA-binding domain, RBD 11 98 IPR035979 GO:0003676
Mibi05g2505 352 SUPERFAMILY RNA-binding domain, RBD 102 213 IPR035979 GO:0003676
Mibi05g2505 352 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 5 352 - -
Mibi05g2505 352 FunFam Heterogeneous nuclear ribonucleoprotein 1 17 98 - -
Mibi05g2505 352 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 184 IPR000504 GO:0003723
Mibi05g2505 352 FunFam Heterogeneous nuclear ribonucleoprotein 1 99 223 - -
Mibi05g2505 352 Gene3D - 98 222 IPR012677 -
Mibi05g2505 352 Gene3D - 18 97 IPR012677 -
Mibi05g2505 352 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 18 94 IPR000504 GO:0003723
Mibi05g2505 352 SMART rrm1_1 107 180 IPR000504 GO:0003723
Mibi05g2505 352 SMART rrm1_1 19 90 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi05g2505 Mibi-ChrMibi05 46976577 46978565 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi05g2505 4 170 Eukaryotic Initiation Factors Gene Family AT1G71770 27.513 1.18e-13 70.1