Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi05g2343 ATGGTATCCAACAATAATGGAATCCACAATATTCAATCCTTCACGAGAATCAACATTCCTTTCCCTTGTGAATGTATCAACAATGGTGGTTTTCTGGGTCATGTGTTTGAGTATACAATATCAGAAGGAGATACTTTTCATTCTATTGCGACACAAACATATTCTTCGTTGACTTCAGTGGATTTACTGAGGAGATTCAATAGCTATAGTGATCCAAATCAGCTTCCTCTCAATGGGAAGCTTAATGTAACAGTGAAATGTTCTTGTGGGAACAGACAGATTTCTAAGGATTATGGATTGTTTATTACTTATCCACTTGGGTTTGAAGATAGCTTGGAATCCATTGTGAACCGGACTGGTATTGATGCAACGTTGCTTCAGAGTTATAATCCTGGTGTTAATTTCAGCCAGCAGCTTGGAGTGGTTTTCATTCCAGGAAGAGATCAAAATGGAAATTACATGCCCCTGGACCCTAGGTCAAAAGGTTCCAGTGGCGTTGCTAGTAGTACTGGTCTTAGAGGCATCATGGAAGGAAAATCTATGGAGTTTTCATATCAAGAAATAGCAAAAGCTACCAATAACTTCAGCTTCGATAACAGGATTGGTCAAGGAGGTTTTGGAACAGTATATTATGCCGAGCTAAGAGGCCAGAAAACTGCAATCAAGAAGATGGATATAAAAGCATCACAAGGGTTTCTTGCTGAGCTGAAGATTTTAACGCATGTTCATCATTTGAATCTGGTGCGGTTGATCGGATATTGTGTGGAGGGATCGCTCTTTCTTGTTTACGAATACATTAACAATGGAGACTTAAGCCATCATTTGCGTTCCTCAGGTATAGATGTATTGCCATGGTCTACAAGGGTGCAAATTGCTTTGGATTCAGCAAGAGGTCTTGAATATATCCATGAACACACAGTGCCCATATATATCCATCGTGACGTAAAGTCTTTGAACATATTAATCGACAAAACCTTCCATGCCAAGGTTGCAGATTTTGGGTTAAGTAAACTCATTGAAGTTGGAAATGCCTCGCTTAATACTCGTCGTCTAGTTGGAACATTTGGCTACATGTCTCCCGAATATGCTCAATATGGAATAACATCTCCAAAAATAGATGTATATGCTTTTGGAGTGGTACTTTATGAACTCATTTCTGCTAAGAATGCTGTTATCAAGACAAGTGGTGAATTTGTTGTTGAATCAAAAGGCCTTGTAGCTCTGTTTGAGAAGTGTCTTCGTAGGCCTGATGCTGTTGAAGATCTTCGCAACCTTGTGGATCCTAGACTTGGACAAAACTACCCCATTGAGTCAGTTTATAAGATGGCCCAACTTGCTAGAGCTTGTACACAAGATGATCCACAACTACGCCCCACAATGAGATCTATTATTGTAGCTCTTATGACACTTTCTTCTTCTACTGATGAAGATTGCAACGTTGTTTGCTCAGCCTTCTCTGATAATCAAACTATCGTAAATCTACTCTCTGGAAGATAA 1497 0.3948 MVSNNNGIHNIQSFTRINIPFPCECINNGGFLGHVFEYTISEGDTFHSIATQTYSSLTSVDLLRRFNSYSDPNQLPLNGKLNVTVKCSCGNRQISKDYGLFITYPLGFEDSLESIVNRTGIDATLLQSYNPGVNFSQQLGVVFIPGRDQNGNYMPLDPRSKGSSGVASSTGLRGIMEGKSMEFSYQEIAKATNNFSFDNRIGQGGFGTVYYAELRGQKTAIKKMDIKASQGFLAELKILTHVHHLNLVRLIGYCVEGSLFLVYEYINNGDLSHHLRSSGIDVLPWSTRVQIALDSARGLEYIHEHTVPIYIHRDVKSLNILIDKTFHAKVADFGLSKLIEVGNASLNTRRLVGTFGYMSPEYAQYGITSPKIDVYAFGVVLYELISAKNAVIKTSGEFVVESKGLVALFEKCLRRPDAVEDLRNLVDPRLGQNYPIESVYKMAQLARACTQDDPQLRPTMRSIIVALMTLSSSTDEDCNVVCSAFSDNQTIVNLLSGR 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi05g2343 498 Gene3D Phosphorylase Kinase; domain 1 171 265 - -
Mibi05g2343 498 Gene3D LysM domain 33 98 IPR036779 -
Mibi05g2343 498 Gene3D Transferase(Phosphotransferase) domain 1 266 489 - -
Mibi05g2343 498 CDD LysM 38 83 IPR018392 -
Mibi05g2343 498 ProSitePatterns Serine/Threonine protein kinases active-site signature. 310 322 IPR008271 GO:0004672|GO:0006468
Mibi05g2343 498 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 166 480 IPR044812 GO:0019199|GO:0045087
Mibi05g2343 498 SUPERFAMILY Protein kinase-like (PK-like) 176 467 IPR011009 -
Mibi05g2343 498 ProSitePatterns Protein kinases ATP-binding region signature. 201 223 IPR017441 GO:0005524
Mibi05g2343 498 FunFam LysM receptor kinase 2 174 265 - -
Mibi05g2343 498 ProSiteProfiles Protein kinase domain profile. 195 470 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mibi05g2343 498 ProSiteProfiles LysM domain profile. 36 83 IPR018392 -
Mibi05g2343 498 FunFam PTI1-like tyrosine-protein kinase 3 266 480 - -
Mibi05g2343 498 Pfam LysM domain 38 81 IPR018392 -
Mibi05g2343 498 Pfam Protein tyrosine and serine/threonine kinase 196 466 IPR001245 GO:0004672|GO:0006468
Mibi05g2343 498 SMART serkin_6 195 430 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi05g2343 Mibi-ChrMibi05 40336110 40343039 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi05g2343 3 498 Receptor kinase-like Gene Family AT3G21630 52.065 0.0 550
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Mibi05g2343 PK_Tyr_Ser-Thr 1.4e-45 CL0016