Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi05g2243 ATGGAAAGTCAGTTTGAGGAGTTAGCTCAAAATCCTAACATTATAATTGCAACACATGGTAGGCTTATGCACCATTTATCTGAAATCGATGACATGTCGTTGCGAAGTGAGAAGCGTCAAACCTTGCTTTTCAGTGCTACGTTACCTAGTGCCCTTGCTGAATTTGCAAAGGCTGGCCTTCGTGATCCTCAGCTTGTTCGGGAAGAGGGTATTGAACCATCTGTATGTTATGGTGGCATGGATCAAGATGCTCGCAAAATTCATATATCAAGGTTCAGGTCAAGAAAGACAATGTTGTTGATTGTGACAGATGTTGCTGCTCGAGGCATAGATATTCCATTACTTGATAATGTTGTCAATTGGGACTTCCCCCCGAAGCCTATGATATTTGTTCATCGAATTGGAAGGGCTGCAAGAGCAGGTCGCACTGGTACTGCCTATTCTTTTGTAACTTCGGAGGATATGCCATACCTTTTGGATCTTCATTTGTTCCTCTCAAGACCAATCAAAGCTGCTCCAACTGAGGAAGAAGTTCTGCAGGATATGGATGGAGCATTTTCCAAAATTGACCAGGCAATAGCAAGGGGAGAAACTATTTATGGTCGTTTCCCTCAAAAAGTCTTAGACCTTGTTTCAGATAGAATTCGGGAAACCGTTGACGCTTCTGCTGAACCTATCATCATTGGAGAAGACATGTCAAAATGCATTTCGCCAAAGCAGACTGTTTTGGAGGCTGAAGGTGAAGCGGCTAAATCAAAGCATCTTCAGGGACCTGCTAGTCAATGGGTTGATGTGATGAAGAAAAAAAGAGCCATTCATGAGAATATTATAAATTTAGTCCACGAGCAGCGCTCTAAGAATAAAGCGGAAGAGGGGGAAATGCAATTGGATATCACTCCGTCCGTGGAGAAAGGAAAAAAAGCTCCTTCTTCCGTCAGTTTGAACAATTTCACGACTTGGGGTTCAGAAACAATGGCGAAAGAAGGAGGAACCCTTCTCGTGAGCTCGAAAGCTGAGTTGAAACGGAAGGAAAAACAACAGAAGAAGGCAAAATCTGGAGGCTTTGAGTCATTGGGTCTTAGTCCTAATGTGTTCAGAGGAATTAAGCGTAAAGGGTATAAAGTTCCCACTCCAATTCAAAGGAAGACTATGCCAATCATTCTTTCTGGTTCTGATGTTGTTGCCATGGCTCGTACTGGTTCTGGTAAAACCGCTGCTTTTCTTATTCCCATGCTTCAGCGTTTGAATCAGCATCTTCCTCAGGGTGGTGTTAGAGCTCTCATTTTGTCCCCTACTAGAGACTTGGCTCTTCAGACTTTGAAGTTCACCAAAGAACTTGGCCACTTTACTGATCTTCGTGTTAGTTTATTAGTTGGAGGTGATAGTATGGAAAGTCAGTTTGAGGAGTTAGCTCAAAATCCTGACATTATAATTGCAACGCCTGGTAGGCTTATGCACCATTTATCTGAAATCGATGACATGTCGTTGCGCAGTGTGGAATATGTTGTATTTGATGAGGCAGATTCTTTATTTGGCATGGGTTTTGCTCAGCAATTGCATCAAATTCTTACACAGCTTGGAGAGAATCGTCAAACCTTGCTTTTCAGTGCTACGTTACCTAGTGCCCTGGCTGAATTTGCAAAGGCTGGCCTTCGTGATCCTCAGCTTGTTCGTCTGGATTTGGAAACTAGAATTAGCCCTGACTTGAAGCTTGCCTTTTTCACCTTGAGGCAGGAAGAAAAACATGCAGCATTATTGTATTTGGTCAGGGAGCAAATTAAATCTGAGGAGCAGACACTGATATTTGTATCCACAAAACATCATGTGGAATTTCTTAACTCATTGTTTAGGGAAGAGGGTATTGAGCCATCTGTATGTTATGGTGACATGGATCAAGATGCTCGCAAAATTCATATATCAAGGTTCAGGTCAAGAAAGACAATGATGTTGATTGTGACAGATGTTGCTGCTCGGGGCATAGATATTCCATTACTTGATAACGTTGTCAATTGGGACTTTCCCCCGAAGCCTAAGATATTTGTTCACCGAGTTGGAAGGGCTGCAAGAGCAGGTCGTACTGGTACTGCCTATTCTTTTGTGACTTCAGAGGATATGCCATACCTTTTGGATCTTCATTTGTTCCTCTCAAGACCAATCAAAGCTGCTCCAACTGAGGAAGAGGTTCTGCAGGATATGGATGGAGCATTTTCCAAAATTGACCAGGCGATAGCAAAGGGAGAAACTATTTATGGTCGTTTCCCTCAAAAAGTCTTAGACCTGGTTGCAGATAGAATTCGAGAAACCATTGACGCTTCTGCTGAGCTAACATCATTGGAGAAGACATGTCAAAATGCATTTCGTTTATACTCCAAGACAAAACCCTTGCCTGCAAAGGAGTCTATTAGAAGAGTGAAAGATTTACCACGCGAGGGGTTGCACCCAATTTTCAAGGACATATTGGAAACAGGGGAGTTAATGGCACTTGCTTTTTCAGAGCACTTGAAAAAGTTTAGGCCAAAGCAGACTGTTTTGGAGGCTGAAGGTGAAGCAGCTAAATCAAAGCATCTTCAGGGACCTGCTAGTCAATGGGTTGATGTAATGAAGAAAAAAAGAGCTATTCATGAGAATATTATAAATCTAGTCCAAGAGCAGCGCTCTAGGAATAAAGTGGAAGAGGGGGAAATGCAATTGGATATCACTCCATCTGTGGAGAAAGGCAAAAAAGTGTCTGGTTCTAAGAGAAAGCCACAAAGCTTCAAGGATGAGGAATACTACATAAGTTCAATACCCCAAAATCATCATATGGAAGCTGGCCTTTCAGTCAGGGCAAAAGAAGACTTTTCTTCAAATAGATTGGAATCCGCTGTTATCGATCTAGTCGCAGATGACAGTTCTAGCATTCAGAAGCAAAAGTCAGTATATCATTGGGATAAGAAAAGTAAAAAGTACATCAAGCTAAACAATGGTGAGCGTGTTGCTGCAAATGGAAAGATAAAGACAGAGGGTGGTGCCAAAGTGAAGGCCAACAAGACTGGTATATATAAGAAGTGGAAAGAACGCTCACACAATAAGATAGGTCATAAGGGGATGGATAATGAGGGTGATTCTCGTGGTTCCACAAGTTCAGCAGGGCATTTCCGAGGTGGTCCCCGGAAATTTAAGGGCAGCAAGAAGCAGCAGTCAATGCCAAATGCTCATGTGCGTTCAGAGATCAAAGATTTAGATCAAATCCGAAAGGAGAGGCAGAAGAAAGCCGACAAGCTTTCATATCTGAAGAGTCAGTCTGCTAAAAAGGGTAAAACATTTGGTAAAAATGGGAAAAAAGGAAAGGGTGGTGGTGGAGGACATGGAAAGAAAGGAAAGGGGGGTGGTGGTGGTGGTGGTGGTGGTGGACATGGAAGGAAAGGAAAGGGAAGGTAA 3420 0.4263 MESQFEELAQNPNIIIATHGRLMHHLSEIDDMSLRSEKRQTLLFSATLPSALAEFAKAGLRDPQLVREEGIEPSVCYGGMDQDARKIHISRFRSRKTMLLIVTDVAARGIDIPLLDNVVNWDFPPKPMIFVHRIGRAARAGRTGTAYSFVTSEDMPYLLDLHLFLSRPIKAAPTEEEVLQDMDGAFSKIDQAIARGETIYGRFPQKVLDLVSDRIRETVDASAEPIIIGEDMSKCISPKQTVLEAEGEAAKSKHLQGPASQWVDVMKKKRAIHENIINLVHEQRSKNKAEEGEMQLDITPSVEKGKKAPSSVSLNNFTTWGSETMAKEGGTLLVSSKAELKRKEKQQKKAKSGGFESLGLSPNVFRGIKRKGYKVPTPIQRKTMPIILSGSDVVAMARTGSGKTAAFLIPMLQRLNQHLPQGGVRALILSPTRDLALQTLKFTKELGHFTDLRVSLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEIDDMSLRSVEYVVFDEADSLFGMGFAQQLHQILTQLGENRQTLLFSATLPSALAEFAKAGLRDPQLVRLDLETRISPDLKLAFFTLRQEEKHAALLYLVREQIKSEEQTLIFVSTKHHVEFLNSLFREEGIEPSVCYGDMDQDARKIHISRFRSRKTMMLIVTDVAARGIDIPLLDNVVNWDFPPKPKIFVHRVGRAARAGRTGTAYSFVTSEDMPYLLDLHLFLSRPIKAAPTEEEVLQDMDGAFSKIDQAIAKGETIYGRFPQKVLDLVADRIRETIDASAELTSLEKTCQNAFRLYSKTKPLPAKESIRRVKDLPREGLHPIFKDILETGELMALAFSEHLKKFRPKQTVLEAEGEAAKSKHLQGPASQWVDVMKKKRAIHENIINLVQEQRSRNKVEEGEMQLDITPSVEKGKKVSGSKRKPQSFKDEEYYISSIPQNHHMEAGLSVRAKEDFSSNRLESAVIDLVADDSSSIQKQKSVYHWDKKSKKYIKLNNGERVAANGKIKTEGGAKVKANKTGIYKKWKERSHNKIGHKGMDNEGDSRGSTSSAGHFRGGPRKFKGSKKQQSMPNAHVRSEIKDLDQIRKERQKKADKLSYLKSQSAKKGKTFGKNGKKGKGGGGGHGKKGKGGGGGGGGGGHGRKGKGR 1139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi05g2243 1139 MobiDBLite consensus disorder prediction 1068 1093 - -
Mibi05g2243 1139 SMART ultradead3 372 579 IPR014001 -
Mibi05g2243 1139 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 336 1023 - -
Mibi05g2243 1139 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 4 159 IPR027417 -
Mibi05g2243 1139 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 423 709 IPR027417 -
Mibi05g2243 1139 Pfam Helicase conserved C-terminal domain 33 141 IPR001650 -
Mibi05g2243 1139 Pfam Helicase conserved C-terminal domain 581 691 IPR001650 -
Mibi05g2243 1139 Gene3D - 323 560 IPR027417 -
Mibi05g2243 1139 Pfam DBP10CT (NUC160) domain 958 1019 IPR012541 GO:0003723|GO:0003724|GO:0005524|GO:0005634
Mibi05g2243 1139 SMART DBP10CT_2 958 1020 IPR012541 GO:0003723|GO:0003724|GO:0005524|GO:0005634
Mibi05g2243 1139 CDD SF2_C_DEAD 64 150 - -
Mibi05g2243 1139 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 28 180 IPR001650 -
Mibi05g2243 1139 Gene3D - 572 795 IPR027417 -
Mibi05g2243 1139 Gene3D - 8 225 IPR027417 -
Mibi05g2243 1139 MobiDBLite consensus disorder prediction 1014 1034 - -
Mibi05g2243 1139 SMART helicmild6 50 141 IPR001650 -
Mibi05g2243 1139 SMART helicmild6 610 691 IPR001650 -
Mibi05g2243 1139 CDD SF2_C_DEAD 579 700 - -
Mibi05g2243 1139 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 66 IPR014001 -
Mibi05g2243 1139 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 384 557 IPR014001 -
Mibi05g2243 1139 CDD DEADc_DDX54 353 558 - -
Mibi05g2243 1139 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 353 381 IPR014014 GO:0003724
Mibi05g2243 1139 MobiDBLite consensus disorder prediction 1101 1115 - -
Mibi05g2243 1139 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 581 730 IPR001650 -
Mibi05g2243 1139 MobiDBLite consensus disorder prediction 1014 1139 - -
Mibi05g2243 1139 Pfam DEAD/DEAH box helicase 377 543 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi05g2243 Mibi-ChrMibi05 36455885 36467144 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi05g2243 355 724 Eukaryotic Initiation Factors Gene Family AT1G72730 33.065 1.72e-59 208