Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi05g2210 ATGGCCGGAACCATAACTCCAGACAAGAACCCTCTTTCATCGCCAACAACATCAAGGTCAATAACACAAACAGTAAACGGCTCACACAAATTCGTGATTCAAGGCTATTCCTTAGCGAAGGGGATGGGAGTTGGGAAATACATAGGGAGCGATTTATTCACAGTGGGAGGTCATCAATGGGCCATTTACTTCTATCCAGATGGCAAGAATCCTGAGGATAATTCTGCATATGTTTCTGTTTTCATCGCCTTGGCTAGCGATGGTGCCGATGTTAGGGCTTTGTTTGAGCTCACGCTTTTGGATCAGAGTGGGCTTGGAAAGCATAAGGTTCATAGCCATTTCGATCGCGCGCTTGAGAGTGGTCCGTATACGCTTAAGTATAAGGGTAGCATGTGGGGATACAAGCGGTTTTATAGACGATCATTGCTTGAAACCTCTGATTTTCTGAAGTATGATTGCCTGAAATTCAAGTGTACAGTTGGAGTTGTAGTTTCAGCTGTAGATTGTCCTCGACGTCACTCTGTTAATGTTCCAGAATCTGATATTGGAGCACACTTTGGCATGTTATTGGAAAGTATGGAGGGTTCAGATATTACTTTTAATGTGGCTGGGGAAAAGTTTGCTGCTCATAAGTTGGTGTTGGCTGCTAGATCCCCGAAATTTCGCTCTAAATTATTTGGAGGTTTAGATGAGGATAAAGAGGAAATTATTGTGACAGATTTAGAACCTAAGGTTTTTAAGGCCGTGCTGCACTTTATCTATCGAGATACCCTTACAGATGAGGTGGACACGATTCCATCTACCACATCTAGTGAATCCTCTGCGTCCGAGACATTGTCAGGAAAGTTGTTAGCTGCAGCAGACAAGTATGGCTTAGAGAGGCTTAAACTGATGTGTGAATCTCATATCTGCAAAGACATCTGTGTAAATTCTGTTGCTGACATATTAACCTTGGCTGACCAATGCCGGGCAAGAGAGTTGAAAGAAGTTTGCTTAAAGTTTGCTGCACAGAATCTAGCAGCTGTGATGAGGTCCGATGGTTTTCAGTCCATGAAAGATAAATGCCCATGGCTACAGTCAGAGATGTTGATGACAATTGCTGGGTGTGAGAGTGATCACTCCAATGCTGGGGGAAAATCTCGGAGTGTGTGGGGCCAACTTTCTGATGGTGGTGACTCAGATGGTAGGAGGGTCAGGCGGAGAACATAA 1209 0.4409 MAGTITPDKNPLSSPTTSRSITQTVNGSHKFVIQGYSLAKGMGVGKYIGSDLFTVGGHQWAIYFYPDGKNPEDNSAYVSVFIALASDGADVRALFELTLLDQSGLGKHKVHSHFDRALESGPYTLKYKGSMWGYKRFYRRSLLETSDFLKYDCLKFKCTVGVVVSAVDCPRRHSVNVPESDIGAHFGMLLESMEGSDITFNVAGEKFAAHKLVLAARSPKFRSKLFGGLDEDKEEIIVTDLEPKVFKAVLHFIYRDTLTDEVDTIPSTTSSESSASETLSGKLLAAADKYGLERLKLMCESHICKDICVNSVADILTLADQCRARELKEVCLKFAAQNLAAVMRSDGFQSMKDKCPWLQSEMLMTIAGCESDHSNAGGKSRSVWGQLSDGGDSDGRRVRRRT 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi05g2210 402 PANTHER BTB/POZ AND MATH DOMAIN-CONTAINING PROTEIN 1 16 363 IPR045005 GO:0016567
Mibi05g2210 402 CDD MATH 27 160 IPR002083 GO:0005515
Mibi05g2210 402 ProSiteProfiles BTB domain profile. 196 262 IPR000210 GO:0005515
Mibi05g2210 402 ProSiteProfiles MATH/TRAF domain profile. 26 160 IPR002083 GO:0005515
Mibi05g2210 402 Pfam BTB/POZ domain 189 305 IPR000210 GO:0005515
Mibi05g2210 402 SMART math_3 31 143 IPR002083 GO:0005515
Mibi05g2210 402 MobiDBLite consensus disorder prediction 377 402 - -
Mibi05g2210 402 Gene3D Potassium Channel Kv1.1; Chain A 172 301 IPR011333 -
Mibi05g2210 402 CDD BTB_POZ_BPM_plant 182 304 - -
Mibi05g2210 402 SUPERFAMILY POZ domain 173 307 IPR011333 -
Mibi05g2210 402 MobiDBLite consensus disorder prediction 1 21 - -
Mibi05g2210 402 FunFam BTB-POZ and math domain 1 172 301 - -
Mibi05g2210 402 Gene3D - 306 379 - -
Mibi05g2210 402 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 25 164 IPR008974 GO:0005515
Mibi05g2210 402 SMART BTB_4 196 307 IPR000210 GO:0005515
Mibi05g2210 402 MobiDBLite consensus disorder prediction 7 21 - -
Mibi05g2210 402 SUPERFAMILY TRAF domain-like 24 167 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi05g2210 Mibi-ChrMibi05 35549482 35554775 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Mibi05g2210 BTB 1.8e-22 CL0033