Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mibi05g2060 | ATGTCAAGTGGAGCAACACACTGGTGTATTGCGTGCAGACGTGAAATCATACCTGAAGGGAGAGATTTTCTGTGCCCTCATTGTAATTGTGGCTTTGTGGTAGAACTTGATGAGGAGCAAAGAATGGCACATATGGAAGATTTCCATCAAGTACCCGACATTTTTGGTGCTTTTCATGCTGTTATGGGGAGGAGATACCCAGAAACAAGATTTCTAGATTCAGTTGATAGTGTCCTGAGGCAGAGAATGGCTGGACGAAACCCAAACTTTGATGTTAGAGGGCGATCTATTTCTGCCATGGGTCCTGATCAGAGTTGGGGCGTTATTAGTTCCGGTCCTTACTTGATATTTCATGGTCAGGTCCCTGGATTCACTTTGACTAATGGCATTCCTAGAGGCGGTCCTAGGCGTGTTGATGTTAGTAACTACTTTATGGGGCCTGGATTAGAAGAACTTATTGAACAGATCACCTTGAATGATCGGCATGGTCCGCCCCCAGCCTCACGTTCTTCAATTGATGCAATGCCTACCATATCAATTACACAGGCTCATCTCCGTTCTGACTCTCACTGTCCGGTTTGTCAAGACAAATTTGAACTTGGTTCTGAGGCAAGGATGATGCCATGTAGCCATATTTATCATTCAGACTGTATAGTCCCTTGGTTGGTTCAGCATAATTCATGCCCTGTTTGCCGTGTTGAGTTGCCGCCTCAGGGACAAGTTAGTCCTCTTGCTACTAGTAATTTGGGAGGAAGTAATGAGGAAAGCACCAACAATGATAGCCTTAGGGAGAGAGAGCAGAACCAAGGAAGGAGAAATCCGTTTTCTTTTTTGTGGCCCTTCCGTTCCTCTAGCTCAAACAGTAATAATCAATCTGGTGAAAGTAGAGGAAGCAACTCTTCAAATAGTCGTGACTAG | 918 | 0.4477 | MSSGATHWCIACRREIIPEGRDFLCPHCNCGFVVELDEEQRMAHMEDFHQVPDIFGAFHAVMGRRYPETRFLDSVDSVLRQRMAGRNPNFDVRGRSISAMGPDQSWGVISSGPYLIFHGQVPGFTLTNGIPRGGPRRVDVSNYFMGPGLEELIEQITLNDRHGPPPASRSSIDAMPTISITQAHLRSDSHCPVCQDKFELGSEARMMPCSHIYHSDCIVPWLVQHNSCPVCRVELPPQGQVSPLATSNLGGSNEESTNNDSLREREQNQGRRNPFSFLWPFRSSSSNSNNQSGESRGSNSSNSRD | 305 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mibi05g2060 | 305 | CDD | RING-H2_RNF126_like | 191 | 232 | - | - | |
| Mibi05g2060 | 305 | SMART | ring_2 | 191 | 231 | IPR001841 | - | |
| Mibi05g2060 | 305 | SUPERFAMILY | RING/U-box | 171 | 238 | - | - | |
| Mibi05g2060 | 305 | Pfam | Ring finger domain | 190 | 232 | IPR001841 | - | |
| Mibi05g2060 | 305 | MobiDBLite | consensus disorder prediction | 271 | 305 | - | - | |
| Mibi05g2060 | 305 | MobiDBLite | consensus disorder prediction | 242 | 305 | - | - | |
| Mibi05g2060 | 305 | MobiDBLite | consensus disorder prediction | 242 | 257 | - | - | |
| Mibi05g2060 | 305 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 154 | 238 | IPR013083 | - | |
| Mibi05g2060 | 305 | FunFam | E3 ubiquitin-protein ligase RING1-like | 154 | 238 | - | - | |
| Mibi05g2060 | 305 | ProSiteProfiles | Zinc finger RING-type profile. | 191 | 232 | IPR001841 | - | |
| Mibi05g2060 | 305 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE PRAJA | 105 | 236 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Mibi05g2060 | Mibi-ChrMibi05 | 29561736 | 29562653 | Dispersed/Proximal |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Mibi05g2060 | 135 | 240 | C3H Transcription Factor Family | AT5G01980 | 40.741 | 8.65e-24 | 99.4 |