Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi05g1954 ATGGGCAATTGTTGTTGTTGTTGTTGCTGCTGTCATAGTGACAACAACGACCCCGGCACCCCGCCGGCGGAGCCCACCATCACCAAACCCGTACCCATAACCACCTACCACGGCGGAGGCCTCAACAATTACGCCGGAACCGGAGCCGGAGCCAGAGGAGGGGGAGCATCCGGCACCGGCGCCACTACCACCACCGGCATCCCCCTCCCGCCGGCGAAATCGTCCCCATTGCCCCATCAGCCCCCTACGAAATCCGGTAAGCCAGGCCCAATGGGCCATGTGCTCCAACGCCCAATGGAGGACATAAAAGCCACATACACCATAGGAAAAGAACTGGGAAGAGGCCAATTCGGAGTCACAAGATTGTGCACACACAAATCAACAGGAAAACAATACGCTTGCAAGACAATTGCCAAGAGAAAACTCACAGGGAAAGAGGATATTGAAGATGTGAGGAGGGAGATTAAGATAATGAGGCATATGGTGGGAAAACCTAATGTGGTTGAGCTTAAAGGAGTGTATGAGGATAAACAATCGGTGCATTTGGTGATGGAATTGTGTGCTGGAGGTGAATTGTTTGATAGGATAATTGAGAAAGGGCTTTATACAGAGAGAGCAGCGGCTTCATTGATGAGGACTATTGTGGAGACTGTGGAAACTTGTCATTCCAATGGTGTGATTCATAGGGATTTGAAACCTGAGAATTTCTTGCTGTTGAATAATCGGGAAGATTCGCCTCTTAAGGCTACTGATTTTGGATTGTCCGTTTTCTACAAAGAAGGAGAGAAATTTAAAGAAATTGTTGGGAGTGCATATTATATAGCTCCAGAGGTATTGAAGAGGAATTATGGTCCAGAAATTGATATTTGGAGTATTGGTGTCATGCTCTACATTCTTCTTAGTGGTGTTCCTCCATTTTGGGCAGATACTGAGTCTGGCATATTCAATGCCATATTAGGAGGGCATGTAGATTTCTCAACCGATCCATGGCCATCCATATCACCGTCTGCTAAAGATCTTATCAAGAAAATGTTGAACTCTGATCCTAAGGCCAGGCTCACTGCCCAACAAGTTCTAAATCATCCATGGATTAAGGAGGATGGAGAAGCACCTGATACTCTTATTGACAATGCTGTGCTCAATAGGCTCAAACAATTCAGAGCAATGAACCAATTCAAGAAAGCTGCTTTAAGGGTGGTTGCTGGGTGCCTATCAGAGGAAGAAATAATGGGATTAAAGGAAATGTTCAAGAGCATGGATACTGATGGCAGTGGAACCATTACAATACAAGAGCTAAAGGAAGGCCTTGCGAGACAAGGAAACAAACTCACTGAACAAGAAGTTAAGCAACTCATGGAAGCTGCTGATGCAGATGGAAATGGAGCCATAGATTATGATGAGTTCATCGCAGCAACAATGCAGATGAACCGAATGAACAAAGAAGAACATCTCTACACTGCCTTCCAATACTTTGATAAAGATAACAGCGGGTATATTACCGTTGAAGAAATGGAACAAGCTCTCAAGGAATTTAACATGCATGACGGCAGGGACATCAGGGAAATCATCTCAGAAATTGACTCAGATAATGATGGAAGGATAAACTATGATGAGTTTGTAGCAATGATGAGTAAAGGATGCCCAGAAGCTATGACCAGGAAGAGGCGGGCAAATTCATACGTTTGA 1686 0.4508 MGNCCCCCCCCHSDNNDPGTPPAEPTITKPVPITTYHGGGLNNYAGTGAGARGGGASGTGATTTTGIPLPPAKSSPLPHQPPTKSGKPGPMGHVLQRPMEDIKATYTIGKELGRGQFGVTRLCTHKSTGKQYACKTIAKRKLTGKEDIEDVRREIKIMRHMVGKPNVVELKGVYEDKQSVHLVMELCAGGELFDRIIEKGLYTERAAASLMRTIVETVETCHSNGVIHRDLKPENFLLLNNREDSPLKATDFGLSVFYKEGEKFKEIVGSAYYIAPEVLKRNYGPEIDIWSIGVMLYILLSGVPPFWADTESGIFNAILGGHVDFSTDPWPSISPSAKDLIKKMLNSDPKARLTAQQVLNHPWIKEDGEAPDTLIDNAVLNRLKQFRAMNQFKKAALRVVAGCLSEEEIMGLKEMFKSMDTDGSGTITIQELKEGLARQGNKLTEQEVKQLMEAADADGNGAIDYDEFIAATMQMNRMNKEEHLYTAFQYFDKDNSGYITVEEMEQALKEFNMHDGRDIREIISEIDSDNDGRINYDEFVAMMSKGCPEAMTRKRRANSYV 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi05g1954 561 FunFam calcium-dependent protein kinase 1 192 371 - -
Mibi05g1954 561 ProSitePatterns EF-hand calcium-binding domain. 492 504 IPR018247 -
Mibi05g1954 561 ProSiteProfiles EF-hand calcium-binding domain profile. 443 478 IPR002048 GO:0005509
Mibi05g1954 561 CDD STKc_CAMK 106 363 - -
Mibi05g1954 561 CDD EFh 412 471 IPR002048 GO:0005509
Mibi05g1954 561 Gene3D - 382 543 - -
Mibi05g1954 561 Pfam EF-hand domain pair 412 472 IPR002048 GO:0005509
Mibi05g1954 561 Pfam EF-hand domain pair 481 544 IPR002048 GO:0005509
Mibi05g1954 561 ProSitePatterns Serine/Threonine protein kinases active-site signature. 226 238 IPR008271 GO:0004672|GO:0006468
Mibi05g1954 561 MobiDBLite consensus disorder prediction 51 94 - -
Mibi05g1954 561 FunFam Calcium-dependent protein kinase 1 372 547 - -
Mibi05g1954 561 Gene3D Phosphorylase Kinase; domain 1 107 191 - -
Mibi05g1954 561 SUPERFAMILY Protein kinase-like (PK-like) 91 389 IPR011009 -
Mibi05g1954 561 FunFam Calcium-dependent protein kinase 1 108 191 - -
Mibi05g1954 561 ProSiteProfiles EF-hand calcium-binding domain profile. 407 442 IPR002048 GO:0005509
Mibi05g1954 561 ProSitePatterns EF-hand calcium-binding domain. 456 468 IPR018247 -
Mibi05g1954 561 ProSiteProfiles EF-hand calcium-binding domain profile. 479 514 IPR002048 GO:0005509
Mibi05g1954 561 ProSiteProfiles EF-hand calcium-binding domain profile. 518 549 IPR002048 GO:0005509
Mibi05g1954 561 Pfam Protein kinase domain 106 364 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mibi05g1954 561 PANTHER SERINE/THREONINE-PROTEIN KINASE 100 539 - -
Mibi05g1954 561 ProSitePatterns EF-hand calcium-binding domain. 527 539 IPR018247 -
Mibi05g1954 561 ProSitePatterns EF-hand calcium-binding domain. 420 432 IPR018247 -
Mibi05g1954 561 Gene3D - 405 473 - -
Mibi05g1954 561 Gene3D Transferase(Phosphotransferase) domain 1 192 372 - -
Mibi05g1954 561 SMART serkin_6 106 364 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mibi05g1954 561 ProSiteProfiles Protein kinase domain profile. 106 364 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mibi05g1954 561 SUPERFAMILY EF-hand 404 543 IPR011992 -
Mibi05g1954 561 ProSitePatterns Protein kinases ATP-binding region signature. 112 139 IPR017441 GO:0005524
Mibi05g1954 561 SMART efh_1 411 439 IPR002048 GO:0005509
Mibi05g1954 561 SMART efh_1 447 475 IPR002048 GO:0005509
Mibi05g1954 561 SMART efh_1 483 511 IPR002048 GO:0005509
Mibi05g1954 561 SMART efh_1 518 546 IPR002048 GO:0005509
Mibi05g1954 561 MobiDBLite consensus disorder prediction 71 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi05g1954 Mibi-ChrMibi05 25718081 25722797 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi05g1954 55 560 EF-hand Containing Proteins AT5G12180 76.078 0.0 816
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Mibi05g1954 Pkinase 2.8e-78 CL0016