Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi05g1928 ATGAACCACGCGCTCAAGGAGGGAATGAGAGGCCTCATGCAGACCCCACTTTACCACATCAATCCCCCTTCCTCTGCCTTCAGAGCCTTTGCTGACTGGGCAGCTTCCTCCGCCGCCGGGAGACCTGTCACCGCCGACGACCTCTCCCTAGGCTTTAATGCCGGACCCACCTCCGCCGTGGGATCCGCCGCCGTCACCACCGGAATGTGGCCTTCCGCCGCCGCCAGATCCTCCCTCAATTACGGCGACATCGGAGGCCTCGGCCTCCGCGACCTCTACGTCGTCGCCCCCGCCTCCTCCTTCCACCACCACCACCACCATCACCACCACCACGACCCCTCCGCCGCCATCGCCGCCGCCGATCCCAATACCGCCAATCCCGCCACCGCCCTCGGCGTCGGCATGATCCCCCTCCTCGCCGCCACACCGTTCCCCGCCGATAACACCGACACCGCGGCGCTGATCGGCAATCGAACCCGAGGCGGCGGAATTCAATTATGGCAAGATCATCAGGAATCGGAGCATGGGAATTACCTAAAGAAAACCGCAACGTCATCGACGACGACGATGTTCGAGCTGAATGATATCAGCTCGGGAGGAGGGGGGAACTTAATTGGGGGCGATAACGGAATAACCGTCTCCGCCGGGAACAGCGGCGGGACCGCCACGTGTCAGGACTGCGGGAACCAGGCGAAGAAGGATTGTAGTTACAGGAGGTGCAGGACTTGCTGTAAGAGCCGGAATTATGACTGCCCTACCCACGTGAAGAGCACGTGGGTCCCTGAGTCTCGCCGGAGAGAGCGCCGCCTCATGGCCGCCACCACCGCCACCGCCGCAGGCGGTGGATCCAAGAAACCTAGGCTTGTCACCTCACAACAAGACACAACAAACTCTCACACTTCCACTTCTAACACCACCCCACCTAGAAGCTTTGACACCAGCTCCAGCCACCAAGATGCGGGTTTTAAGGAATCGTTACCGGGGCAAGTGAGGGCGCCGGCGGTGTTCAAGTGTGTGCGGGTGACGGCGGTGGATGATGGGCAGGATGAGTTTGCGTATCAGGCGACTGTGAAGATTTGTGGGCATGTGTTCAAAGGGTTTTTGTATGATCAAGGGGTTGATGGTAGAGAAGTGTATCCGAATTTGTCGGAGCTTCATCTCTGTGGCGGTGGCCGGGGAGGAGGCGGTAATGGCGGTTCGTCGTCGGCTCTTATGTTGGATCCATCTGATGTGTATGTAGCTTCAGGTGGTGGTGGCTTGCTTGGAGGAGGATCAACTTATGGTAATCCAATGAATTAA 1299 0.592 MNHALKEGMRGLMQTPLYHINPPSSAFRAFADWAASSAAGRPVTADDLSLGFNAGPTSAVGSAAVTTGMWPSAAARSSLNYGDIGGLGLRDLYVVAPASSFHHHHHHHHHHDPSAAIAAADPNTANPATALGVGMIPLLAATPFPADNTDTAALIGNRTRGGGIQLWQDHQESEHGNYLKKTATSSTTTMFELNDISSGGGGNLIGGDNGITVSAGNSGGTATCQDCGNQAKKDCSYRRCRTCCKSRNYDCPTHVKSTWVPESRRRERRLMAATTATAAGGGSKKPRLVTSQQDTTNSHTSTSNTTPPRSFDTSSSHQDAGFKESLPGQVRAPAVFKCVRVTAVDDGQDEFAYQATVKICGHVFKGFLYDQGVDGREVYPNLSELHLCGGGRGGGGNGGSSSALMLDPSDVYVASGGGGLLGGGSTYGNPMN 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi05g1928 432 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 100 414 IPR007818 GO:0003700|GO:0006355
Mibi05g1928 432 Pfam Domain of unknown function (DUF702) 221 374 - -
Mibi05g1928 432 MobiDBLite consensus disorder prediction 286 322 - -
Mibi05g1928 432 MobiDBLite consensus disorder prediction 273 326 - -
Mibi05g1928 432 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 326 373 IPR006511 -
Mibi05g1928 432 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 223 265 IPR006510 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi05g1928 Mibi-ChrMibi05 25355695 25358257 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi05g1928 21 411 C2H2 Transcription Factor Family AT5G12330 47.229 7.32e-91 279
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Mibi05g1928 DUF702 1.2e-57 No_clan