LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mibi05g1925	ATGGAAGAATCAGGAAAATTACAATCCGAAGAGACTAAAGGCTCTACGGAAACAAATAAGAAGAGAAAACTCAAAACACCTGCTCAGGTTCATGCATTGGAGAAATTTTATAATGAGCACAAATATCCCTCTGAGGAAATGAAATCAGTAGTTGCTGAGGAGTTGGGGTTGACAGAAAAACAAGTTTCTGGATGGTTTTGCCATCGAAGGCTAAAAGATAAAAGATTGCTGAAAGATGAAGCCGGTGCTAATGGGCGACAAGATTTTTCAAGTGGTGTTATCCAAGATCATGGAAGTGGACTAAGGCAAGATTCATGTGGAAGCACCAAACATGGTGATTATAGGCATCTTGATCCCAAAGAGGTTGAAAGTCGTGGCCTTCATGGAAGTCGGGATCTTTTAGTTTCAGATATGGCCTGTGAACGTAGGAATCATTATTCCAAAAATGTTTGTGCAATGAATGACACATCATCTGAGAGCAGCTCATATTTGCAAGATAGGGATTCATATGACGCTGAGCCTTCTGGGTATCAAACACCTAATGGAGCTCTGCCAACTAAAATTCCCAAGGTTGCCATAAACATGAGACATAAACCATCAGGCTATCTTAAAGTAAAAGGAAAGAAAGAAAATCCTGTCATAACTGCTGTTAAGAATCAATTAGGAAGAAATTATCGGGAGGATGGTCCGCTACTTGGTGTAGAATTTGATCCACTTCCTCCAGGGGCATTTGAGTGTCAAATTGCAGATCCATTTCATGAAACATTCTATATGGCAAATCGTGCTTTTAACCGCTCTCCGGAAATTCCTGCTGTGAAAAGGCAACCCAGTCTTTGTGCTAGATATGATTCGTATAATGCCAAATTCAATTCCCAAGATTCACATATGGAAGGAGAAAATCTCTCTGATTTCCAGGTTAAGAAATCTCTCCAGAATTCAAAGCAAAGGCCACCTTTGTATAATAATACCTTTCGATTTCCTGGCAAAAACTCTTCTCTGGATTTGTACGAACATTCTGTTGGTGAAGCACCTGCATATGATAGCAAAGAGAATCGTGGGGTTGGCATCAAGCACGGCTTTGAAGGGTTGAAATTTGATCCTTCTTCTAATCATAATGATCATGATGATGATAACCTTGAAGCAAACCCAAAAGACTCACTGTTGCATGGATATGATAATGTCAATTCAAAGATTGTTCCGAGTGAATATATAAAACTTAAGCCTTCCAACTCGATCAGAAATTCTTTTGTTTCTGTGGATACAAAGGATAGAGGAGGACTGTCCTCTAGGATGATAAAGGAAAAGAAGTCTAGTGAAAAAAGAAAGGCAAGAAAACAAGGTGATAATCCAGATGAACTAAGGATGTTTTCACATGAGGCTGCAGAACGTCTTGTTGATCCACCTCTGCAATACAATGTTAAAGAAGATCGTGTTGCTGAGATGCAACCACATAAAATCCAGAGATCTTCCATGGAAGTGTCATCTAGCTTTAGCGAGGATGAAACTGCCATTCCCAGCTCGTCGCTTGATGAAGCAGTTGGAATTGATTGCGAGTAA	1557	0.3982	MEESGKLQSEETKGSTETNKKRKLKTPAQVHALEKFYNEHKYPSEEMKSVVAEELGLTEKQVSGWFCHRRLKDKRLLKDEAGANGRQDFSSGVIQDHGSGLRQDSCGSTKHGDYRHLDPKEVESRGLHGSRDLLVSDMACERRNHYSKNVCAMNDTSSESSSYLQDRDSYDAEPSGYQTPNGALPTKIPKVAINMRHKPSGYLKVKGKKENPVITAVKNQLGRNYREDGPLLGVEFDPLPPGAFECQIADPFHETFYMANRAFNRSPEIPAVKRQPSLCARYDSYNAKFNSQDSHMEGENLSDFQVKKSLQNSKQRPPLYNNTFRFPGKNSSLDLYEHSVGEAPAYDSKENRGVGIKHGFEGLKFDPSSNHNDHDDDNLEANPKDSLLHGYDNVNSKIVPSEYIKLKPSNSIRNSFVSVDTKDRGGLSSRMIKEKKSSEKRKARKQGDNPDELRMFSHEAAERLVDPPLQYNVKEDRVAEMQPHKIQRSSMEVSSSFSEDETAIPSSSLDEAVGIDCE	518

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mibi05g1925	518	MobiDBLite	consensus disorder prediction	420	457	-	-
	Mibi05g1925	518	MobiDBLite	consensus disorder prediction	426	457	-	-
	Mibi05g1925	518	MobiDBLite	consensus disorder prediction	84	125	-	-
	Mibi05g1925	518	ProSiteProfiles	'Homeobox' domain profile.	16	76	IPR001356	GO:0003677
	Mibi05g1925	518	SUPERFAMILY	Homeodomain-like	19	83	IPR009057	-
	Mibi05g1925	518	MobiDBLite	consensus disorder prediction	481	518	-	-
	Mibi05g1925	518	SMART	HOX_1	18	80	IPR001356	GO:0003677
	Mibi05g1925	518	MobiDBLite	consensus disorder prediction	88	106	-	-
	Mibi05g1925	518	MobiDBLite	consensus disorder prediction	1	27	-	-
	Mibi05g1925	518	MobiDBLite	consensus disorder prediction	156	182	-	-
	Mibi05g1925	518	MobiDBLite	consensus disorder prediction	358	388	-	-
	Mibi05g1925	518	MobiDBLite	consensus disorder prediction	108	125	-	-
	Mibi05g1925	518	MobiDBLite	consensus disorder prediction	367	383	-	-
	Mibi05g1925	518	MobiDBLite	consensus disorder prediction	156	185	-	-
	Mibi05g1925	518	Gene3D	-	9	90	-	-
	Mibi05g1925	518	Pfam	Homeodomain	20	75	IPR001356	GO:0003677
	Mibi05g1925	518	CDD	homeodomain	20	75	IPR001356	GO:0003677
	Mibi05g1925	518	PANTHER	HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN	1	510	-	-
	Mibi05g1925	518	MobiDBLite	consensus disorder prediction	487	505	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mibi05g1925	Mibi-ChrMibi05	25274836	25279196	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mibi05g1925	3	510	Homeobox Transcription Factor Family	AT4G03250	38.131	6.94e-78	251

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HB-other	Mibi05g1925		Homeodomain	2.2e-16	CL0123